| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_5626 |
|---|
| Symbol | |
|---|
| ID | 8361803 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 7175963 |
|---|
| End bp | 7176820 |
|---|
| Gene Length | 858 bp |
|---|
| Protein Length | 285 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 644967767 |
|---|
| Product | transcriptional regulator, AraC family |
|---|
| Protein accession | YP_003125251 |
|---|
| Protein GI | 256424598 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.808973 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACAGCA TACCTATCAG ACATATTCAT ACGACGCCGC AGCAACAGGA AAGCTCCTAT
CGCTTCAGCA TCCGGAATGT ACAGAACTTA CTGGCCGGCG AAGACATGCA CGAGTCATTA
CACCGGCATG ACTTCTTTTA CCTGCTTATC CTGAAAAAAG GTAGTGGTCA GCATCACATC
GACTTTAAAT CCTACACTAT TGAAGGGCAT TCCCTTTTCC TGGTACGTCC GGGACAGGTA
CATGAACTCA CTTTACACGC CGACTGCAGC GGCTACCTGC TGCAGTTCAG TGAAGGTTTC
TATACTGCCC AAGACCAGCA GAACAGACGC CTCCTCCGCA AAGCCGGCAG CATCAATCAC
TATACCTTCG ATGCCCGCAG ATTTCAGAAA ATAACAGGCA TCCTGCAATA TATCTCCGAT
GAATACACGC TGCAGGAAGA ACGTTACCAG GAAGCGATAA AAGCAAATCT TTCATTTCTC
TTTATCGAAC TGCTGAGAGA TCAGCGCCAT ACCGCCTCCA CCAAGGAACC GCGCTATTTT
CAGGAGCGCC TGGATACCTT CCTCGAACTC GTAGAAACAC ACTTCGTCGA ATACAAACAG
GTATCCCAAT ACGCTGCCAT GATGCACCTG ACCACCTATC AGCTCAACGC CATCACTAAA
CAAACACTGG ATAAAACCTG CTCTGAAGTC ATCAACGATT ATATTATCCT GGAAGCGAGA
AGACAACTCC GTGCTACCAC TGAACAAATC AATAACATCG CCTTCCGGCT GGGTTATGAA
GACGTCTCCT ATTTTATCCG CTTCTTCAAA AAACACACGG CTTATACACC CGATGCTTTT
CGGCAGAATT GCAGATAA
|
|---|
| Protein sequence | MDSIPIRHIH TTPQQQESSY RFSIRNVQNL LAGEDMHESL HRHDFFYLLI LKKGSGQHHI
DFKSYTIEGH SLFLVRPGQV HELTLHADCS GYLLQFSEGF YTAQDQQNRR LLRKAGSINH
YTFDARRFQK ITGILQYISD EYTLQEERYQ EAIKANLSFL FIELLRDQRH TASTKEPRYF
QERLDTFLEL VETHFVEYKQ VSQYAAMMHL TTYQLNAITK QTLDKTCSEV INDYIILEAR
RQLRATTEQI NNIAFRLGYE DVSYFIRFFK KHTAYTPDAF RQNCR
|
|---|
| |