Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_5578 |
Symbol | |
ID | 8361755 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | + |
Start bp | 7124805 |
End bp | 7126160 |
Gene Length | 1356 bp |
Protein Length | 451 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 644967722 |
Product | outer membrane efflux protein |
Protein accession | YP_003125206 |
Protein GI | 256424553 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 0.46516 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAACAGT ATCATCATTT AAAAGGATAT ATATTTACTG GTACGCTTGC ACTCTATCTA TTGAGTGCAG GCGGCAGCCA GCTGAAAGCA CAGGATATCA GTCTGGACAG CGTTATCAGC AAAGCGCAAA AGAACAATAA CAGTCTGAAA GCCGATGCGC TCAATATTGA CCGTGCACAG TCGCAAACCA TCATTTCCAG AAGTTATCTC AGGCCCGAAG TAGGTTTCTC TTCCGCTGTG AATCATTATT TCCAGCAACC CCTCTTCTTT GGTTTTGGCG ACGCCGGTAC AACTCCTGCT GATAAGATCG GATACGGCCG CTTTGGTGGT AAAGACCAGG CAAATGCATC CCTGGATATC AGCGTACCGA TATATAGTCC GCTGCAGCGA TCTACCATCG AAAAGAACAA ACTGGAAGAA ACACAGCGTC GCCTGCAATA CCGTATGAAA GCGGCAGACG TTACAGCTGC TGTCAAACAG GTATATCTGC GCATACTCGT ATTGGAAAAA AGGAAACAGT TACAACAGGA AAGTATCGAA CGAAACAAAC GTGCACTCGC GGATGCCAGA TCCCTCTTCT TACAGGGGAA GGCTTTACTG GTAGACACAC TCCGGGCCTA TACCTCCTGG AAGAACCTGG AACCGGATCT CTTACGGATC AGTTACGCGA TCGACGTCAG CAAGGAACAA CTCAATATCC TGATGGGAGC AGATCCCGCT GCACACATCA GTCTTGCTGA CACATTGCAG GCCCCTGAAA ATGATACGCT GCCGGACGAA CCTGCGCTGT TTGCCCGTTC CCTACAGGAA AGACCCGAAC TGCAGTTACT TTCATTACAG CGGGATATCA GTCAAAAGGA AGTAGCCACC GCAAAGAATG CCAGACTACC TGTTATCACA GGTGTAGGAC AATACCTCTT GCAGACACAG GCCAACAGTT TTAAATACTA TGACGCCTAC TATCCTTCCA CTTCTTTTGT GGGCGCAAAA ATCACCCTGC CAATCTATAC AGGTGGCAGA CATAATGAAC GTATCAAAAA AGCACAGATA GAACAACAGC AGGCCAGTAT TCAATACACT GATGCAACAG ACAAACTACA AGGTCAGGTA AAACAGATTG TCGCCAATCT GAATGAGACT TATCAGCGTA TACAAACACA GGCTACGGTG ACCAGTACCG CTGAAAGCAG TTACCGGCTG ACGAAATACC GTTACGAAAG AGGAGCCGCT ACAAGGCTTG AGCTGGTAGA TGCGGAACTG TCATTGACAA GCGCGAGATC AGCGTACCTG GAAGCGGTAT TTGATTTTGA GGCTGCGAAG ATAGAGATGG AGCGACTACT GGGCACAACA CACTGA
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Protein sequence | MKQYHHLKGY IFTGTLALYL LSAGGSQLKA QDISLDSVIS KAQKNNNSLK ADALNIDRAQ SQTIISRSYL RPEVGFSSAV NHYFQQPLFF GFGDAGTTPA DKIGYGRFGG KDQANASLDI SVPIYSPLQR STIEKNKLEE TQRRLQYRMK AADVTAAVKQ VYLRILVLEK RKQLQQESIE RNKRALADAR SLFLQGKALL VDTLRAYTSW KNLEPDLLRI SYAIDVSKEQ LNILMGADPA AHISLADTLQ APENDTLPDE PALFARSLQE RPELQLLSLQ RDISQKEVAT AKNARLPVIT GVGQYLLQTQ ANSFKYYDAY YPSTSFVGAK ITLPIYTGGR HNERIKKAQI EQQQASIQYT DATDKLQGQV KQIVANLNET YQRIQTQATV TSTAESSYRL TKYRYERGAA TRLELVDAEL SLTSARSAYL EAVFDFEAAK IEMERLLGTT H
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