| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_5529 |
|---|
| Symbol | |
|---|
| ID | 8361706 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 7054231 |
|---|
| End bp | 7055076 |
|---|
| Gene Length | 846 bp |
|---|
| Protein Length | 281 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 644967675 |
|---|
| Product | UspA domain protein |
|---|
| Protein accession | YP_003125159 |
|---|
| Protein GI | 256424506 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0589] Universal stress protein UspA and related nucleotide-binding proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.0897314 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAACAT TACTGATTCC CGTTGATTTC TCCGCTACCT CTGACAATGC AGTGAATTTT
GCCATCGAAT GGGCCAGAGC CTACAGCTAT AACCGGATTA TCCTGCTCAA AACTTTCTAC
GATACTGTAT TCGATCATAT TGTTGTTTCT GCGGAATACG CCCCTGTAAG CCCTCATTAT
ATGGCCAGGG AACGCGAGGA AGCTGCACAC CGGATGGAAA ACCTGTCCAG GGAAATCGCT
ATCAAAACAC GCGGTGTAGA CGTCATTTCC ATGGTCAGCG AAGCGCCTTT ACTGCGTGCC
ATTATGGAAG TAGTCCGTGA AGAATCTCCC GAGCTCATCG TCCTGGGTAG TGACAACTAC
CGCTATTCCA GCGGCAGTTT CATTGCCGGC AACCTGATCT CCATCGCAAA AGCCAGTCCG
GTAAGGGTAC TCATTGTACC GTCTACTTAC CAGTACCAGC GCGTAGAGAA AATACTGGTA
CCGGCGGACT ACAAAACACT TGACTCCCTG GACAAAGTGC GTAATCTGCA GATACCGCCG
CAATGGAAAG ATAGTAAACT ACTGGTACTC AATGTCGATC CGAAAGAACG TTACCTGAAT
CCCGACGATC ACCTTAAAGC AGCCGAACAA CACGTACACG AACGCCTGAA AGACTACCCG
CACGACATCT GCTACAGCAA CGACAAAAAC ATCATCAACG GTATACTGAG TTTCACACAA
CGCACCCCCG TCCAGTTGAT CATCTCCTTG CCCGGCAAAC ATAGCTTTCT TTATTATCTG
ACACATAAAA GCATTTCCGA CGCCATCTGT CGTAACGCAC AGGAACCTGT GCTCATCTTA
AAATAG
|
|---|
| Protein sequence | MKTLLIPVDF SATSDNAVNF AIEWARAYSY NRIILLKTFY DTVFDHIVVS AEYAPVSPHY
MAREREEAAH RMENLSREIA IKTRGVDVIS MVSEAPLLRA IMEVVREESP ELIVLGSDNY
RYSSGSFIAG NLISIAKASP VRVLIVPSTY QYQRVEKILV PADYKTLDSL DKVRNLQIPP
QWKDSKLLVL NVDPKERYLN PDDHLKAAEQ HVHERLKDYP HDICYSNDKN IINGILSFTQ
RTPVQLIISL PGKHSFLYYL THKSISDAIC RNAQEPVLIL K
|
|---|
| |