Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_5521 |
Symbol | |
ID | 8361698 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | - |
Start bp | 7043539 |
End bp | 7046931 |
Gene Length | 3393 bp |
Protein Length | 1130 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 644967667 |
Product | TonB-dependent receptor plug |
Protein accession | YP_003125151 |
Protein GI | 256424498 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.0000129215 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 0.0524869 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCAAAAC TACGTATGAA AAAAATTGCC ACGACCTTCA GAAGACGGGC ACTGTCCATC GTCTTTCTAG TACTCAGTGC GTCTCTTTTC CTGCCGGTAT ATGCAGGTAA AGGGCAAATC CTGAAAGAAA CCAACGTTAC GATCCGGCTG AAAAGCGGAT CACTGGAGTC AGCGATACAA GATCTGCACT CCTCCACCAA AGTCGCTTTT GCGTACGACA AACAACTGTT AAGATCATTC CCTGTGTCCG ACTGTTCTTT CTCTAATGAA AGACTGGACA TAGTATTGGA GCAGCTGCTG CGTAATAAGC AATTAGGTTT TGAAGAAGTA AATAATGTGG TTGTTATCAG CAAGGCTAAT AACAACGCGT CTGCTAATGC TCCTAAGAGT ATCCGCGAAG ACATCGTTGT GTCAGGCGTG GTGAAGGATG AAAGCGGTAA TCCTATGCCG GGTGTAAGCG TAGCTGTACG TGGAACCAGC ACGATGACGT CTACCGGTGC TGACGGTAAA TTTAAACTGA TCGTACAATC ACGTGATGCG GTGATCGGCT TCAGCTTTAT CGGTTATGAA ACCGCTGCTG TTACTGTCGG TACACAGACG AGCGTAGAGG TACATATGAA AATAGCGAGC AAGTCCCTCG GTGAGGTTGC CGTTGTAGGT TTCGGTACGC AGCGCAGGGT AAGCCTGGTA GGTGCGCAGT CCGAGATCAA ACCTGCGGAA TTCAAACAAC CTACGGCTAA TATCAGTACG ATGCTGGCAG GTCGTATCGC CGGTGTGGTA GGCGTACAAC GTTCCGGTGA GCCGGGTAGA GGCGCTGCCG ATCTGTGGAT ACGTGGTATC TCCACTTTCG GTAATGGTAA TAATTCCGGT CCGCTGGTAC TGGTAGATGG TGTGGAACGT TCTATCAATA ACATCTCTCC GGAAGATGTA GAATCATTCA CCGTACTGAA AGATGCTGCC GGTACAGCGG TATATGGTGT ACGTGGTGCA AATGGTGTTA TTCTCATCAA AACAAAAACA GGTAAAGTAG GTAAACCACA GATATATCTG GATTATAATG AGGGTGTAAA TACATTTACC CGTCGTCCGG AAATGCTGGA CGGTATCTCT TATATGCGTC TCGCAAATGA AGCGTTGACT ACCCGTAATC AGAATCCTAA ATATTCTGAA GAATATATTC AGAACACCAT CAGCGGAAAA GATCCTTTGT TGTATCCGAA TGTAGACTGG ATGGACGCTG TATTCAATAA ATACGGCCAT ACCCGCAGCA CGAACCTGAA TGCGAGTGGT GGTGTGGAGA ATGCACAATA TTATGTGTCC CTGGGTTATT ACAATGAATC AGGTTTCCTG AAGACGGATG ACCTGGCAAA GTACAATTCA TCCCTGAAGT ATAACAGGTA TAACTTCACC AGTAACCTGA ATCTGCGTGT TACTAAAACA ACAAAACTGG ATGTAGGTTT ACAGGGATAT TTTTCCAATG GTAACTATCC CGGTATATCA TCCGGAGACA TTTTCCAGAG TGCAATGGAC GCTGCTCCTG TCGCATATCC GATCATGTAT CCAGGCGGCT TCGTACCCGG CCAATCATCA AACGGAGGTT TCCGTAACCC TTATGCCGAT CTCACCCGCA GAGGTTATAC CAACGAGTTC CGCAATCAGC TTTATTCCAA CATCAGAGCT ACCCAGGATA TGGACGCACT GACCAGGGGT TTGAAAGCTA GTGTGATGTT CGCGTTTGAT TCTTACAACC AGAACAACAT TATCCGTTCA AAGAGAGAGG ATACTTATTA TCCTGACCAG ACCAATCCTT ACAAACCGGA TGGTTCACTG AACCTGGTGA AAACATACAC CGGTAACCAG TACCTGGGAT TTGATAATAG TCCTGGCAGT CGTCAGACCA GCCGTAAGTT CTATACAGAG GCATCGCTGA ACTATGACAG AAGCTTTGGT AAACATCGCG TGGGTGGCCT GGCATTGTTC TATTCAAGCG ATAGAACGAA CGCACTGGCA GGAGATTTCA TCAGCTCTAT CCCTGAGCGT TCACTGGGGC TTGCAGGTAG AGTGACCTAT TCTTACTCAG ACAAATATTT CGTTGAACTG AATGCAGGTT ATAATGGTTC TGAACTGTTT GCACCTGGTA ACCGTTTTGG TTTCTTCCCT GCAGTAGGTA TAGGCTGGAT CGCATCCGAA GAGAAATTCT TTGAACCATT GAAAAATGCG ATCAACTTCC TGAAATTCCG TTATTCAAAT GGTAATACTG GTTTGGGTAG CGCAGGCGAC CGATTCCTGT ATATCACGAA TCTGAATACT TACAACGATG CTTATAAATA TGGTCAGGTG CCACAGTTTG TAGGTGGTAT CAATATTGAC CGTTATGCAA CAAATGTAAA ATGGTCTGTG TCTAACAAGC AGGACTTGGG CATTGAGTTC CGCACCTTGA ATGATCAGTT GTCTGTTATT GTTGATCTGT TCAAGGAACA CCGTACCGGT ATCTTTTTGC AACGCGCTTC AAGCGTAGAC TTTATGGGGC TGCAGAATCA ACCATATGCT AACCTGGGTA TCGTGGATAA CAAAGGTTTT GATGCAACAC TCGAATACAG CACACGTTTT GGAGCAGTAG ACTTAAAACT GAGAGGTAAT ATCACCTATA CAAAAGATAA GCTGATAGAA GATGATCGTC CGCCGCAGAA TTATCCATGG ATGGAGCACA GAGGAAACAA CGTGCTGGCG CGTTACGGTT ATATCGCTGA AGGATTATTT GGAAGCGAAG ATGAAGTAAA TAAGAGTGCA GTACCTGGAG ATAGATCTAA AGTTAAACCA GGTGATATCA AGTATAAAGA CCTGAATGGA GATGGTCTCA TTAATAATTA TGATGTAACG AAGATCGGTC GTGGCGATGT ACCAAGCACG GTATATGGTT TCGGTTTCGA CCTGGGTTAT AAAGGCTTCA GCTTTGGTTT ATTGTTCCAG GGTATTTCGG ATGCAGATAG AATGCTGAGA GGTTCCGGAA TTGTACCATT TAACGGTGGA GGTGGTGTAA CCAATGCTTA TGCGATCGCT ACTGACAGAT GGACGGTAGA CAATCCGAAC CCGAATGCAT TTTATCCGAG ACTTGCTTAT GGAGAATCTG AGAATATCAA TAATACGCAA GCAAGCTCCT GGTGGATTAA AGACGTGAGC TTTGTGCGTC TTAAATCGGC ACAGCTGGCG TATAACTTCC CGGCAGCGAT GATGGGCAGA ACAGGTATCC GCGCTGCCTC TGTTTATTTG CAGGGCATTA ATCTACTTAC TTTCAGCAAA TTCAAACTGT GGGACCCTGA ATTGAACACA GACAATGGTT CCGCTTATCC GAACATCAGG ACTATTTCCC TGGGTATGAA TCTGAAATTC TAA
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Protein sequence | MPKLRMKKIA TTFRRRALSI VFLVLSASLF LPVYAGKGQI LKETNVTIRL KSGSLESAIQ DLHSSTKVAF AYDKQLLRSF PVSDCSFSNE RLDIVLEQLL RNKQLGFEEV NNVVVISKAN NNASANAPKS IREDIVVSGV VKDESGNPMP GVSVAVRGTS TMTSTGADGK FKLIVQSRDA VIGFSFIGYE TAAVTVGTQT SVEVHMKIAS KSLGEVAVVG FGTQRRVSLV GAQSEIKPAE FKQPTANIST MLAGRIAGVV GVQRSGEPGR GAADLWIRGI STFGNGNNSG PLVLVDGVER SINNISPEDV ESFTVLKDAA GTAVYGVRGA NGVILIKTKT GKVGKPQIYL DYNEGVNTFT RRPEMLDGIS YMRLANEALT TRNQNPKYSE EYIQNTISGK DPLLYPNVDW MDAVFNKYGH TRSTNLNASG GVENAQYYVS LGYYNESGFL KTDDLAKYNS SLKYNRYNFT SNLNLRVTKT TKLDVGLQGY FSNGNYPGIS SGDIFQSAMD AAPVAYPIMY PGGFVPGQSS NGGFRNPYAD LTRRGYTNEF RNQLYSNIRA TQDMDALTRG LKASVMFAFD SYNQNNIIRS KREDTYYPDQ TNPYKPDGSL NLVKTYTGNQ YLGFDNSPGS RQTSRKFYTE ASLNYDRSFG KHRVGGLALF YSSDRTNALA GDFISSIPER SLGLAGRVTY SYSDKYFVEL NAGYNGSELF APGNRFGFFP AVGIGWIASE EKFFEPLKNA INFLKFRYSN GNTGLGSAGD RFLYITNLNT YNDAYKYGQV PQFVGGINID RYATNVKWSV SNKQDLGIEF RTLNDQLSVI VDLFKEHRTG IFLQRASSVD FMGLQNQPYA NLGIVDNKGF DATLEYSTRF GAVDLKLRGN ITYTKDKLIE DDRPPQNYPW MEHRGNNVLA RYGYIAEGLF GSEDEVNKSA VPGDRSKVKP GDIKYKDLNG DGLINNYDVT KIGRGDVPST VYGFGFDLGY KGFSFGLLFQ GISDADRMLR GSGIVPFNGG GGVTNAYAIA TDRWTVDNPN PNAFYPRLAY GESENINNTQ ASSWWIKDVS FVRLKSAQLA YNFPAAMMGR TGIRAASVYL QGINLLTFSK FKLWDPELNT DNGSAYPNIR TISLGMNLKF
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