Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_5520 |
Symbol | |
ID | 8361697 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | - |
Start bp | 7041721 |
End bp | 7043520 |
Gene Length | 1800 bp |
Protein Length | 599 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 644967666 |
Product | RagB/SusD domain protein |
Protein accession | YP_003125150 |
Protein GI | 256424497 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.0000150302 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 0.0291709 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAAAGC TAGTATATAC ATTCCTCGTT TTGGCACTCA TGTCCACTTC CTGCTCAAAG TACCTGGATC AGGTACCTGA TGATAGGCTT ACTATTGATG AAACTTTCAG GACCTGGGCA ACCGCAGAGC GTTTTCTGGC GGACGTGTAT CGTCGCGTCC CGGACGAATA CGGTCAGCGT GATGCAGGTT CTGAAAGCAA CCGCGGGGTA TGGACCGGCG GCTGTGATGA AGCTGAATTT TTATGGAGCT TTGTAAGGTC CAATGATATC AATATTGGTA ACTGGGATGC GAATTCCGGT TTTGTAGGTG ACTACTGGCG TAATTTTTAC CGTGGTATCC GTGGCGCCAG TGTGTTCATG GAGAATGCAG ATAAGATCAC AGACCTTTCA CCCGATCTGA TCAAAAGATA TAAAGCAGAA GCGAGAGCGT TGAGAGCGAT GTATTATTTC TACCTGATCC GTATTTATGG ACCAGTAGTG ATACTGGGGG ATCAGGTGCC TTCTGTCGAT ATGAATATCC AGTTACCACG TAATTCTTTT GATGAGTGTG TTGCTTTTAT TACCAGTGAA CTGGAAAAAG CCGCGACAGA CCTGCCAACT ATACAGGGTA GAACAGAAGA CTATGGCCGT ATTACCAAAG GTGTGGCGAT GGCTTTCCGT GCAAATGCAT TGATGTATGC GGCGAGTCCA TTATACAACG GTAATACCGA TCTGGCGGAT ATGGTTAATA AAGATGGTAA ACACCTGATC AGTCAGACCT ATGATGCCAA TAAGTGGAAG GTAGCTGCGG ATGCTTATCA GAGTTTCCTG AGCACCTTTG TTCCAGGCAC TTATGAACTG TACAGGGAAA ATGATGCCAG CGGAAATTAT AGCCCATATC TGTCTTGTCG TAATGTAATC CTGAAGGACT GGAACAAGGA AGTGATCCTG GCACGACCAG GTAGCTCTAT TGGTCCGAGA CAATATGAAC TGACGCCTTA TCATGCCGGC TCCGCTTCGC GTGATGTAAA AGGAAGTGGT GGCCTGGGTG CTACGCAGAA CATGGTGGAT GCCTTTTTTA TGAAGAATGG CAGAAATATT GATGATCCAC AATCAGGTTA TGTAAAGACC GGCTATTCCC AGTTCCAGAC CCCTTATGAT ACACATCCGA TTGAGGTGTA TAATCAATGG GTAGACAGGG AGCCGCGTTT TTATGTAAAT ATAACTTTTG ATGGCAGTAC CTGGCTCAAT ACCTCTTTTG GGGAGATCAC AACACGTTTG TACAACACGG GAAACTCCGG TAAACAGACA GGTGGAGGAG ACTATTCTCC AACCGGTTAT ATTGTACGTA AGGCGATGGG TACTGGTAAA TGGGATGTAG ACAATCGTTC TGTTATCCTT TTACGTCTGG CGGAAATATA TCTGAGTTAT GCAGAGTGTC TTAATGAAGC AGAGCCAGGT AGCGCAGAAG CACTAAGATA CCTTAACCTG ATCCGTGAGA GAGCAGGCAT ACCACAATAC GGTTCTGAAT CACTGCCAGC GCCTGCAGGA CAGGATGCAT TGCGTGAAGC GATCCGTAAA GAGCGCAAGA TAGAGATGGC ATTCGAGAAC AATCGTTTCT TCGATGTACG TCGTTGGAAG ATCGGGGAGC AAACACAGAA CGGACCGATG TACGGACTGA ATATCGCCAG CGATTTACCG GATTTCCTGA AGGTAGTGGT GTTTGAAACC CGTGTGTTTA ACAAGCGTCA TTATTTCTTC CCGATTCCTA CCGATGATGT TAACAATGAT AAACAGTTAG TACAGAATCC AGGCTGGTAA
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Protein sequence | MKKLVYTFLV LALMSTSCSK YLDQVPDDRL TIDETFRTWA TAERFLADVY RRVPDEYGQR DAGSESNRGV WTGGCDEAEF LWSFVRSNDI NIGNWDANSG FVGDYWRNFY RGIRGASVFM ENADKITDLS PDLIKRYKAE ARALRAMYYF YLIRIYGPVV ILGDQVPSVD MNIQLPRNSF DECVAFITSE LEKAATDLPT IQGRTEDYGR ITKGVAMAFR ANALMYAASP LYNGNTDLAD MVNKDGKHLI SQTYDANKWK VAADAYQSFL STFVPGTYEL YRENDASGNY SPYLSCRNVI LKDWNKEVIL ARPGSSIGPR QYELTPYHAG SASRDVKGSG GLGATQNMVD AFFMKNGRNI DDPQSGYVKT GYSQFQTPYD THPIEVYNQW VDREPRFYVN ITFDGSTWLN TSFGEITTRL YNTGNSGKQT GGGDYSPTGY IVRKAMGTGK WDVDNRSVIL LRLAEIYLSY AECLNEAEPG SAEALRYLNL IRERAGIPQY GSESLPAPAG QDALREAIRK ERKIEMAFEN NRFFDVRRWK IGEQTQNGPM YGLNIASDLP DFLKVVVFET RVFNKRHYFF PIPTDDVNND KQLVQNPGW
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