| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_5179 |
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| Symbol | |
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| ID | 8361356 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | + |
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| Start bp | 6459711 |
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| End bp | 6460796 |
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| Gene Length | 1086 bp |
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| Protein Length | 361 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 644967327 |
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| Product | efflux transporter, RND family, MFP subunit |
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| Protein accession | YP_003124811 |
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| Protein GI | 256424158 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.00472624 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAAAGAA TTGTCATGCT TACGGGCCTG GGGGCATTGC TTTGCCATAC CAGCTGCAAA
CCATCTAAAG CCGAAGAAAA AGAAGGCGAC AGCAAGTTTT TTGTTACCAA TCCTATCAGG
ATGGACACGG CCGTCACAAA GGAATATGTA TCGCAGATCC GCTCTGTCCG GAACATTGAA
ATAAGAGCCC AGGAAAGAGG TTACCTGGAA AACATCCTGA TTGACGAAGG ACAGTTCGTA
AAGAAAGGAC AACTCCTTTT CAAGATCATG CCGAAGATCT ATGAATCTGA ACTCGCAAAA
GCACAGGCAG AAGCGAAGGC CGCAGAGATC GAATTACAAA ACACACAGGC ATTGTCTGAC
AAAAACGTCG TTTCCCCCAA TGAACTGGCC ATGGCAAAAG CCAAACTGGA AAAGGCAAAT
GCAGAAATGT CCCTCGCAAA AGTACACCTC GCATTTACAG ACATCAGGTC TCCGTTTGAT
GGCTATATAG ACAGACTCCC CCTCAAACTG GGTAGCCTGA TAGATGAAGG CGAATTACTC
ACCACCCTGA GCGATAACAG TGAAATGTTT GTCTACTATA ACGTCTCAGA ACCAGAATAC
CTGGATTACA AAAACAGTGA ACAGAATGGC GCCAAAACAA AGGTAAATCT GCTGGAAGCC
AATAACGAGC AGTTTAAATA TCCTGGCATC GTTGAAACTA TTGAAAGTGA ATTCAATAAT
GAGACAGGTA ATATCGCCTT CAGGGCCAAA TTCCCTAATC CGGATAAACT CCTGAAACAC
GGTGAAACCG GTAAAGTGCT GATGACGGTT CCACTGAAAA ATGCACTCAT TATTCCGCAG
AAAGCGACCT ATGAGATCCA GGACAAGAAA TACGTATTTG TGGTAGACAA AAACAATGTG
CTGAAATCAA GAGAAATCGC CATCGAGGCA CAGATGCCTG ATCTTTTCGT CGTAAAAAGT
GGTGTGACTG AAAATGACAG AATCCTGCTG GAAGGTGTAC AGAAAGTGAA AGACAATGAT
AAGATCACTT ATCAATTCCA GGATCCCGCT ACTGTTATTA CCCATCTCAG ACTAAAAGCG
GAATAG
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| Protein sequence | MKRIVMLTGL GALLCHTSCK PSKAEEKEGD SKFFVTNPIR MDTAVTKEYV SQIRSVRNIE
IRAQERGYLE NILIDEGQFV KKGQLLFKIM PKIYESELAK AQAEAKAAEI ELQNTQALSD
KNVVSPNELA MAKAKLEKAN AEMSLAKVHL AFTDIRSPFD GYIDRLPLKL GSLIDEGELL
TTLSDNSEMF VYYNVSEPEY LDYKNSEQNG AKTKVNLLEA NNEQFKYPGI VETIESEFNN
ETGNIAFRAK FPNPDKLLKH GETGKVLMTV PLKNALIIPQ KATYEIQDKK YVFVVDKNNV
LKSREIAIEA QMPDLFVVKS GVTENDRILL EGVQKVKDND KITYQFQDPA TVITHLRLKA
E
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