Gene Cpin_5004 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_5004 
Symbol 
ID8361180 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand+ 
Start bp6256668 
End bp6257252 
Gene Length585 bp 
Protein Length194 aa 
Translation table11 
GC content47% 
IMG OID644967153 
Producttranscriptional regulator, TetR family 
Protein accessionYP_003124638 
Protein GI256423985 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.0270987 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.0251839 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCAAGG CAGAAAAAAC AAGACAGTTT ATTGTAGAGA AGACCGCACC CATTTTCAAC 
ACAAAAGGAT TCGCAGGTAC TTCCCTATCT GACATGACAG AGGCTACCGG ATTAACAAAA 
GGTAGCATCT ACGGCAACTT CGCTAACAAG GATGAAGTGG CACTGGCCTC ATTTGATTAC 
AATCTCCTCA AACTAAGGTC CTACCTCAAC GCGGAAGAAG AAAAAGCAAT AACGATCAAA 
GACAAACTGA AAGTACGTAC CAGGATCTTC GCCGACGAAC GTCCTGTTGC CTATCCGACA 
GGCGGTTGTC CGCTTTTAAA TACGGCTACA GAAGCAGATG ATACACATCC GGCACTGAGA 
GCAAGAGTAG CAGATGCCTT GGAAGCAATA AAAGACAGGG CTGTCAGGTT GATCGAAACA 
GGTATTCAGA GCGGAGAAAT CTCCGCAGGT ACTGATCCGG AACAAGCCGC ATTGACACTA 
ATGGCCATGG TACAGGGCGC TATCATGATC GCCCGGACTA CCGCCAAACG TAGCTATGGT 
AAGAGTATCA TGGAAGCGAC ACAACGATAC ATTGATTCAC TCTAA
 
Protein sequence
MSKAEKTRQF IVEKTAPIFN TKGFAGTSLS DMTEATGLTK GSIYGNFANK DEVALASFDY 
NLLKLRSYLN AEEEKAITIK DKLKVRTRIF ADERPVAYPT GGCPLLNTAT EADDTHPALR 
ARVADALEAI KDRAVRLIET GIQSGEISAG TDPEQAALTL MAMVQGAIMI ARTTAKRSYG 
KSIMEATQRY IDSL