Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_4955 |
Symbol | |
ID | 8361131 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | - |
Start bp | 6199937 |
End bp | 6201103 |
Gene Length | 1167 bp |
Protein Length | 388 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 644967104 |
Product | Lycopene beta and epsilon cyclase |
Protein accession | YP_003124589 |
Protein GI | 256423936 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.127751 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 0.0780528 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAACATT TCGACTACAT CATTGCCGGC GCCGGATGCG CTGGAAGAAG CCTGGCTGTA CATCTTATTC ATGCCCGCAA ACTGGCGGGT AAAAAAGTTC TTCTGGTAGA AGATATTGAA GACAAGGAAC ACCGGCAGCA TTGGTGTTTC TGGGAAAAGG ATCCCGGTCT GTTTGACGAG ATTGTCTCTC ACTACTGGGC TAAACTATCA TTTACGGGTA GTGAGGGCCA TCAGGTGCTA GACATCGCTC CCTATCATTA TAAAATGATT ACTGCCGACC GCTTTTACGA TTATACCCAA AAGCTCATTA CATCAGCTCC CAATGTAACG GTCCGGAAAG GGTTGATAGG GAAAGTTTTT AACACACGGG GAAAATCGGC AGTGATTATC GACGGACAAC GTTTTACAGC GGAATATGTG TTTAAAAGTG GTCAGCCTCC GCTGGCGTCA GACGCTGCGG AGAGCAACCT GATCCGGTCT TTTAAAAGCT GGCAGGTGGA GACCGTCACA CCTTGTTTTG ACCCGGATAT GGCCACCCTG ATGGATTTTA AGGCGGTGTC ATTAGACGAT AGCGGTTTCT TTTATACCCT GCCATATTCC TCTACGAGAG CAGTGATAAC GTATACACTT ATTGCGGAGG AAATACCTGG TGAGGAGATG TACGATATGG TGTTACAGCG CTATATGCGA CAGGAATTAC AATGTAGCCT TTATAGCATC AGTCATTCAG AGACCGGGCA TATACCCCTG TATGAATATG CCCGTAACAG TGTCGATGAC AGGATTATCT ATCTCGGTAC CGGCGCTTAT GATATCAAAG CTTCCGGCGG TCACGCGTTC CGCTTTATAC AACGGCACTC GCAACATATC GCCCAGCGGC TCCTGGATGG GGAGCATCCT GCTACCGGCG GCATCCGTTT TGATCGTTTT AGTTTTTATA ACAGCATCTT TCTTCGTTTA CTCGCGTTGC CCGGGGTATC TTTAAAAGGG CTCTTTTCAC GCTTATTCCA GCGAAATGCA CCTGCTACTA TTCTGAAATT CCTGGATCAT GAAACCTCGT GTTGGGAAGA ATTACGTATC TTCACAACTC TACACAAACG GGCTTTTGCA ACAGAAATAT TCAAGAAATT GAAAGGACAA ATTTCATCCA CAGCGAAAAG TTTTTAG
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Protein sequence | MEHFDYIIAG AGCAGRSLAV HLIHARKLAG KKVLLVEDIE DKEHRQHWCF WEKDPGLFDE IVSHYWAKLS FTGSEGHQVL DIAPYHYKMI TADRFYDYTQ KLITSAPNVT VRKGLIGKVF NTRGKSAVII DGQRFTAEYV FKSGQPPLAS DAAESNLIRS FKSWQVETVT PCFDPDMATL MDFKAVSLDD SGFFYTLPYS STRAVITYTL IAEEIPGEEM YDMVLQRYMR QELQCSLYSI SHSETGHIPL YEYARNSVDD RIIYLGTGAY DIKASGGHAF RFIQRHSQHI AQRLLDGEHP ATGGIRFDRF SFYNSIFLRL LALPGVSLKG LFSRLFQRNA PATILKFLDH ETSCWEELRI FTTLHKRAFA TEIFKKLKGQ ISSTAKSF
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