| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_4952 |
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| Symbol | |
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| ID | 8361128 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | + |
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| Start bp | 6190205 |
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| End bp | 6195829 |
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| Gene Length | 5625 bp |
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| Protein Length | 1874 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 644967101 |
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| Product | putative large extracellular alpha-helical protein |
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| Protein accession | YP_003124586 |
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| Protein GI | 256423933 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2373] Large extracellular alpha-helical protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.317972 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.146368 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGCTGATAA TATCTATTTC AGCGGCAGCG CAACATCCTC TATCCCAGGG ACGCCGTACA
AGCGAATACG ACTACCTGTA TCAGCTGACT GATAATGAAG CAATAAAGAT CACAGGGAAG
GGACAGCAGC AAATCATAGC TGCCTGTCTG CATACCTTGA AAGATTCCGT GCTGCACGGC
AGTCCGCTTC CTGAAAACCT TCTTCCGGGC AACTACCTGC GGGTCTGTGC AAAGGATGAT
CACCTCGAAG CTGCTTTCGT TCCTATTAAC AATATAGCCG TAAAATTCGG CCTCAACTGG
CGGGACCTGA TGGTCATCTT ACACGATCAG CAGGGAGCAC TGATCAGAGA TGCGGAAGTC
CGCATCGGCA AAAACAAACT ACCATATGAC GCGCAGACGC AAACATGGCG CAAGGAAAAA
TACAACAAGC AGGAATTATT ACAGATATAC TATAAGGGCG TATTGAACTG CATCCCCTTA
AGCCGGGTTA TCAATCGTTA TGCTAAAAGA AGGCGTCCGA ACATCATTCA ACGTTTAAAA
TACAATAACC CACGTGTCAG GTCTGATTAC TACAACACAC AAAATAATCG ATACAGGTAT
GGGAGCTACA TCGCATTCAA TAAACCTGCT TATAAACCCG GTGATACGGT AAAATTCAAA
GGATTTCTGA GCAACAAAAA AGGATTCGCA TACAATAAGA AGGTGCTGGT AAGGCTGGTA
GACAAGGATT TCGATGTGGA TACGATATTA ACTGCCATTA TGCCGGCAAC ACCTGGCAAC
TATCACTATC AGTTTGTGTT ATCTCCGGCA CTGATTGAAC AACTTGATTT AACACTCGAT
CGCACTTACC GCATTTCTTT TGAAACGCCT GAAAGCCGCA AATATGATCT TAATAATTAC
GATGGAGATC TCACAGATGA AGAATATGCA GCCAAACGGA CTATTCTGCT CCAGGGAAGT
TTCAAACTGG AAGAATACGA GCTGCAACAA CTTACCTTCT CTGCAAGAGC AGATAAGTCT
ACACATAAAG CAGGTGATCC GCTTTCTGTA TATCTCAGCG CAAAAGATGA AAATGACCTG
CCGGTAATGG ATGGCAAGAT CTGTTTGTAT GTCGAATTGA AGAGTATAGG AAAAATGTAT
GAGAATATAG TAGTTCCTGA CACACTGTGG CAATATAGCG GAGGCCTGGA TATATTGGGA
GAAACCAGGA TCATGCTGCC TGATAGCATA TTTCCCAAAG CAGATCTGAC ATATAGGATC
ACATGCGTCT TCACAAACAG TAATAATGAA CGGAAAACGA ATATCCTCAC GGCAACATAT
GCTTACAATA ACAGCGGTTT TAATTTCCGG ACCAGTCATG ATACGCTGCA TATTACACGG
CTTATACCTG CATCAGGTAC AGAGAATGTA TTGATCGCTG CGCTCAACCA GCGAAATGAT
ACAATCGGAA AATATTACAG ACCGCTGCCT GCAGCAATAA AACTTTCTCC ATTTTCGGAC
CATTATGCGG TCATCAGCAG AAATACTGTT GAACATTATG TGGTTGATGC AAACTTACCG
GACATCAGCC TGCTCAGCAA CTGGCATGAC GATATCGCCG GGATACAGGT ACAAAATCCC
TTACAACTAC CTTTATGGTA TACGATCATA AGCGGGAAAA AGATAGTTGA ACGCGGTTAT
AGTGATTCCC TTCACTGGCA GGGATCTACA AAACATAACA AGCAATATTA CGTGTACGTC
AATTACATAT GGAAGAACAA AATAATGCAG AAAGGGGAAG CGTTACAAGA TCCGGGAGGA
AGACTGCATG TCGCAGTAAC GACACCCCGC ACCGTCTACC CCGGACAAAC AACTGACATA
AACATCCACG TAACTGACAA GTACCAGCGA CCTGTAGCCG GCGCAGATCT GACGGCATTT
GGGTATACCA GTAAATTCTG GGGAAACACG GATATCGCGA TCAGTGCTTT CGGACTACAA
ACAAAAAAAA GAAAGCTGTA TCCTATGGTA GATAGTTCCT CTCATGCTTT GCATCCTTCC
GCTTTTCTGA CACTTGATTG GCTGACGTAC AGAAAGAAAA TGGGACTGGA TACACTGCCA
TTCTTCAGGT TTACACACCC GGACAGCGTT TTCACATTTA CAGAGCCGAC TCCTGACAGT
GTCACACAGA TAGCTCCCTA TGTATTTTCA GAAGGGCATA TGCAGGCAGC TGAAATACTG
GAGATAGACG GGATGCCCGT TTATTACACA CGGTCATTCC CTTCACGCCC TTACAGCTTT
GCCGTAACCC CAGGTAAACA CAGTATCGGG ATACGGACAC TCTATCAATC TATCCGTTTT
GATATGGTGG CACAAAAGGG AGTAAAAACA TTTATAAGTA TTAACAGTGC CATACAGCTG
CCAGGATATG CCGTGGAGCG GGTACCTTAT TCTCTGACAA CCTATGAAAT GGCTACGCTT
GACCGGTATA TGCTGCGACT GGAAAATACA TTTACGCCTG ATGATCAGGT ATACATCCGG
CAGCAAAGTC AATTCTATGA AGTAAATAAC ATTATTGCAG CCCCTGAATA TCGCTGGCGG
GATTTATTAA TCGGCCCTAT GACAAAAGCA GATGCTTTAC TCATCAAGAA AAATAGTTTC
ATCCAGTCAT TTACGCCGGA ACCGGGTTAT CTGTTTGACA TCAGGGAAGG CTTTGTCAAA
GAAAAAGAAC AAAAAGAGGA TCTGGCTGAC ATCTATGAAA ATGTAACCCG CGACACAAGT
TTATCGTCGC TGGCACTGAC AGGAAAACTG GTAGATAGCA TGATAAGGAA ACATCAGGAT
GAAATGCTCC TTACTATCAG CAAACAATTC ACCCGGGCCT ATAAAGACCG TTCCGACAGC
AGGGTCCAGA TCAGTTTCGG GCAGCAGGAA CAGAAATTGT CCAACAGCAT ACAACAGTTC
CTTTTCTTCA GATATGACAG TTCATCAACG GTACGTGCTT TCGGCCCTGA CAAAAGACAG
TTCACTGACA TGCATCCCGG ATATTACAAG ATGATCATCC TGCTGAATGA TAACAGATAT
CTGCTCCAGG ATAGTCTGTT TCTGAGATCC GGCGTCCTGC ATGGTTATTT GTTTGACACA
CTACCTATCC TTGCTGCCGA TAATAGCAGC AAAAGACTGG ATACACTCCT GAGAAAAGCG
CTGACGATTC CCGGGGTAAA ACAATCTGTT ATCGAAACCT ATATCAGACA GTTCAATACA
GCTAAGTCAA AAGACACTAC CTCCGTATGG ATTACCGGTA TAGTACAGGA TGAACATTTC
TATCCGGTAC AGTGGGCAAG TGTAAAAATA GCTGGCAGTA AAACCGGTAT AGCTACTGAT
GAAAACGGAC GCTTTAGTAT ACGGGTGATG AAAGAAGAAA CACTTGACAT CAGTTTTGTC
GGCTATGAAA TGGTGAGCAT CCCGGTCACT GATGCCACTG ATTATGTCAT AACAATGCAT
CAAAGTTCAA ACAGGATGCA GGAAGTCGTT GTAACGGCGC TAGGTATAAA AAGGGAACAG
AAAGCATTGG GATATGCTGT AAGTACTATT ACTTCTGAAC AGATCACAAA CATACACTAC
CGGAACTTTG CAGAAGCGTT ACAAGGTAAA GCAGCCGGCG TGCATATCAC AATAGCCCCA
TCATCCCATG AAATAATACT GGAAACACAA GGCGAAGAAG CGCTTCCTGA TATGAACGAA
TTACCCCAGG GAATACCCGC TTACAGCCTG CGCAGTAATT TCAGAGACGA CGCATTCTGG
CAACCTGCAC TACTGACGGA TGCCAACGGT AATGCTTCTT TTAAAGTGAC TTACCCTGAT
GACATCACTA AATGGCAAAC AACTGTTATC GCCATGTCAG GTAAGAAACA AGCAGGCATA
AATCAAATGG CTATCCGCTC TTTCAAAACG TTAACTGGCA CACTCGCCAT TCCTACCTTT
ACTGTCAATG GCGATTCCGT ACTGGTGATC GGAAAAGCAC TGAATTACGC GTCAGACAGT
ATGAATATCA ACAGATCCTT CTTTGTCAAT AACAATCTCC TGAAACATGC CAATGGCTAT
CTGACAAATG CCATCATTGA TACGGTGCCG GTAGTGATCA ATACTACGGA TAGCATCCAG
TTCAGGTACA CGGTCGAAAA AGAAGGCTAC ATGGACGGAG AAGAACGAAA AATCCCTGTT
ATAGAACGTG GAACGACAGA GACAAAGGAC CTCTTTACCG CGCTGCGGAA TGATACCTCC
TTTACATATA CACCGGCTTA TCATTCACCA TTGGTCGTCC ACGCAGTATC TGCCGTACTA
CCCATACTGA CAGATGAAAT AGAACAGGTG GAAAATTATA AATACCTGTG CAACGAGCAA
CTGGCATCAA AACTGAAAGC ATTCCTGCTG GAAAAGAAGA TAGCTGCTTC TCTTCACAAA
GACTTCGGAA AAAACAAGGA TATCAAACGC ATTATCGATA AATTAAACCA GCAAAAGAAT
CAGGGCATGT GGGGTTGGTG GAGAGAATCC CCTGCATCAC TCTGGATCAC CAGACATGTA
ACAGAGGCTA TGATAATGGC AGAGACACAG GGTTACAAGA CGGATCTCAA TAAAGAAAGT
ATCATCAACC TGCTCACCAG GGAACTGACA GCTACCAGGT GTAATGACAG TATTGGCTAC
ATGCTTTTAT TGTCACAGCT AAATGCCAGC ATTGATTACA AATCCAATAT TGACAGCCTG
ATTGCCCGGT CGGGTAAAAA TGGCTACGAT ACGATCAGAC TGACCTTACT GCAACAACAA
ACAGGCCTCC CTGTTGATCT GTCCACACTG CTTTCCCGCC AACAGCAGAC CGTCTTCGGT
AATACCTTCT GGGGGAAAGA TACTGTTCAT CTATTCAATA ACAGTATCCA GTCTACTTTA
CAGATGTACA AAATACTCCG TCATGCAGGT GGTCATGATG CACTGCTGCA AAGCATAAGA
GCTTACTTCC TGGAACAACG CCAAACTGGT CATTGGCGGA ATACCTATGA ATCGGCACAA
ATACTGGAAA CCATCCTGCC GGATGTCATG CAGGAAGAAG CACAATCAGC CGCCACAGTC
GATATCAACG GGAAAAAGAT CACTCAATTC CCGTATACAG ATACTGTCAC TGCCGGGGAT
ATCACCATTC GTAAACAAGG CAAAACACCG GTCTATTTCA CCGCTTATCA GCAGTTCTTT
AATAAAGCAC CGGAAAAGAT CGCGGGGCTG TTTGATGTGA CGTCCGTTTT CGCTGATGCC
AATACCACTT TGGCAACCCT GGAAGCAGGT AAACCTGTTA CACTGACCGT CACTGTTTAT
GCAAAGCAAA CAGCCGATTA TGTACTCGTG GAAATACCTA TCCCTGCCGG TTGTTCCTAT
GCAGACAAAT CCGGGCAATG GAGCAACAAT GAAGTACACC GCGAACACTT CAAGGAAAAG
GTCGGCATTT TCTGTACGCA GCTAACAGCA GGTAAACACA CTTTTACCGT TTCCCTGCTC
CCCCGCTATA CCGGAAAATA CTATCTCAAT CCGGCCAAAG CGGAAATGCA ATATTTCCCG
GTATTTATGG GACGCGAGGC TTTGAAACAA GTTTATATTC ACTAA
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| Protein sequence | MLIISISAAA QHPLSQGRRT SEYDYLYQLT DNEAIKITGK GQQQIIAACL HTLKDSVLHG
SPLPENLLPG NYLRVCAKDD HLEAAFVPIN NIAVKFGLNW RDLMVILHDQ QGALIRDAEV
RIGKNKLPYD AQTQTWRKEK YNKQELLQIY YKGVLNCIPL SRVINRYAKR RRPNIIQRLK
YNNPRVRSDY YNTQNNRYRY GSYIAFNKPA YKPGDTVKFK GFLSNKKGFA YNKKVLVRLV
DKDFDVDTIL TAIMPATPGN YHYQFVLSPA LIEQLDLTLD RTYRISFETP ESRKYDLNNY
DGDLTDEEYA AKRTILLQGS FKLEEYELQQ LTFSARADKS THKAGDPLSV YLSAKDENDL
PVMDGKICLY VELKSIGKMY ENIVVPDTLW QYSGGLDILG ETRIMLPDSI FPKADLTYRI
TCVFTNSNNE RKTNILTATY AYNNSGFNFR TSHDTLHITR LIPASGTENV LIAALNQRND
TIGKYYRPLP AAIKLSPFSD HYAVISRNTV EHYVVDANLP DISLLSNWHD DIAGIQVQNP
LQLPLWYTII SGKKIVERGY SDSLHWQGST KHNKQYYVYV NYIWKNKIMQ KGEALQDPGG
RLHVAVTTPR TVYPGQTTDI NIHVTDKYQR PVAGADLTAF GYTSKFWGNT DIAISAFGLQ
TKKRKLYPMV DSSSHALHPS AFLTLDWLTY RKKMGLDTLP FFRFTHPDSV FTFTEPTPDS
VTQIAPYVFS EGHMQAAEIL EIDGMPVYYT RSFPSRPYSF AVTPGKHSIG IRTLYQSIRF
DMVAQKGVKT FISINSAIQL PGYAVERVPY SLTTYEMATL DRYMLRLENT FTPDDQVYIR
QQSQFYEVNN IIAAPEYRWR DLLIGPMTKA DALLIKKNSF IQSFTPEPGY LFDIREGFVK
EKEQKEDLAD IYENVTRDTS LSSLALTGKL VDSMIRKHQD EMLLTISKQF TRAYKDRSDS
RVQISFGQQE QKLSNSIQQF LFFRYDSSST VRAFGPDKRQ FTDMHPGYYK MIILLNDNRY
LLQDSLFLRS GVLHGYLFDT LPILAADNSS KRLDTLLRKA LTIPGVKQSV IETYIRQFNT
AKSKDTTSVW ITGIVQDEHF YPVQWASVKI AGSKTGIATD ENGRFSIRVM KEETLDISFV
GYEMVSIPVT DATDYVITMH QSSNRMQEVV VTALGIKREQ KALGYAVSTI TSEQITNIHY
RNFAEALQGK AAGVHITIAP SSHEIILETQ GEEALPDMNE LPQGIPAYSL RSNFRDDAFW
QPALLTDANG NASFKVTYPD DITKWQTTVI AMSGKKQAGI NQMAIRSFKT LTGTLAIPTF
TVNGDSVLVI GKALNYASDS MNINRSFFVN NNLLKHANGY LTNAIIDTVP VVINTTDSIQ
FRYTVEKEGY MDGEERKIPV IERGTTETKD LFTALRNDTS FTYTPAYHSP LVVHAVSAVL
PILTDEIEQV ENYKYLCNEQ LASKLKAFLL EKKIAASLHK DFGKNKDIKR IIDKLNQQKN
QGMWGWWRES PASLWITRHV TEAMIMAETQ GYKTDLNKES IINLLTRELT ATRCNDSIGY
MLLLSQLNAS IDYKSNIDSL IARSGKNGYD TIRLTLLQQQ TGLPVDLSTL LSRQQQTVFG
NTFWGKDTVH LFNNSIQSTL QMYKILRHAG GHDALLQSIR AYFLEQRQTG HWRNTYESAQ
ILETILPDVM QEEAQSAATV DINGKKITQF PYTDTVTAGD ITIRKQGKTP VYFTAYQQFF
NKAPEKIAGL FDVTSVFADA NTTLATLEAG KPVTLTVTVY AKQTADYVLV EIPIPAGCSY
ADKSGQWSNN EVHREHFKEK VGIFCTQLTA GKHTFTVSLL PRYTGKYYLN PAKAEMQYFP
VFMGREALKQ VYIH
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