| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_4924 |
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| Symbol | |
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| ID | 8361100 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | - |
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| Start bp | 6158412 |
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| End bp | 6159686 |
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| Gene Length | 1275 bp |
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| Protein Length | 424 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 644967073 |
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| Product | Xylose isomerase domain protein TIM barrel |
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| Protein accession | YP_003124558 |
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| Protein GI | 256423905 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4952] Predicted sugar isomerase |
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| TIGRFAM ID | [TIGR02629] L-rhamnose catabolism isomerase, Pseudomonas stutzeri subtype |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.000076523 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 0.290794 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAATATAG AAAAATTCCA GGCCGCTGCT TTTAATGATT TCCATATACA GGCACATGAG
CGCAATTTTG AGCATGTTGC AGCGAATGTT CCCGACATAC AGAACCTCAT TCAGAAATTA
CAGGATTTCC AGGTAGCGAT TCCCAGTTGG GCACTGGGTA CAGGTGGTAC CCGTTTTGGC
CGTTTCTCCG GAGGTGGGGA ACCGCGTAAT CTTGAAGAGA AAATCTCCGA TATCGGCATA
TTACACGCAC TGAACAGAAG CAGCGGGGCT ATTTCTCTGC ATATCCCCTG GGATATTCCG
GAGAATGCAG CCAGCATTAA AGCATTGGCA GCGCAATATG ACATCCGTTT TGATGCGGTT
AATTCCAATA CTTTCCAGGA CCAGGCGGAT CAGGCGCATA GCTATAAATT CGGCTCCCTG
CATCATGTAG ACAAGGCTGT CCGCAAACAG GCCATAGAAC ATAACATTGA AGTGATCAGA
TATGGCGTAG AACTTGGATC CAACGCGCTC AGTCTCTGGC TGGCAGATGG TTCCTGTTTC
CCTGGTCAGC TGAATTTCAG AGGCGCCTTC AAACGTACGC TGGATAGTTT ACAGGAGATT
TATGCGGCAT TACCGGATGC CTGGAAATTA TATATCGAAT ACAAGGCATT TGAGCCTAAT
TTTTACTCTA CCACCATCGG TGACTGGGGA CAATCCCTGC TTTTCGCGAA TAAGCTGGGT
CCTAAAGCGT ATACGCTGGT TGACCTGGGA CATCATCTGC CGAATGCCAA TATTGAGCAG
ATCGTTTCCC TATTGCTGAT GGAAGGCAAA CTGGCCGGTT TCCACTTCAA CGATTCCAAA
TACGGTGATG ACGACCTGAC TGTAGGTAGC ATCAACCCTT ATCAGCTTTT CCTGATCTTC
AATGAACTGG TGGAGGGAAT GAATGCCCGT GGTATGAACC ATGCGACTGA CCTGGGTTGG
ATGATCGATG CTTCTCATAA TGTGAAAGAT CCGCTGGAAG ACCTTTTACA ATCCGTTGAA
GCCATCATGA TCGCGTATGC ACAGGCGCTG CTGGTAGATA CAAAAGCATT ACAGACCGCC
CAACAGAACA ACGATGTGGT GGCAGCACAG GAAATATTAC AGGCTGCTTA CCGCATGGAT
GTTCGTCCGC TGGTAGCGCA GGCACGTCTG CAGGCAGGAG GTGTTTTACA ACCTGTTGCG
TTCTATCGTG AGTTTAAGAT AAGAGAACAG CTGATTAAAG AAAGAGGGCT GAAGACCGTT
GCTACAGGAC TTTAG
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| Protein sequence | MNIEKFQAAA FNDFHIQAHE RNFEHVAANV PDIQNLIQKL QDFQVAIPSW ALGTGGTRFG
RFSGGGEPRN LEEKISDIGI LHALNRSSGA ISLHIPWDIP ENAASIKALA AQYDIRFDAV
NSNTFQDQAD QAHSYKFGSL HHVDKAVRKQ AIEHNIEVIR YGVELGSNAL SLWLADGSCF
PGQLNFRGAF KRTLDSLQEI YAALPDAWKL YIEYKAFEPN FYSTTIGDWG QSLLFANKLG
PKAYTLVDLG HHLPNANIEQ IVSLLLMEGK LAGFHFNDSK YGDDDLTVGS INPYQLFLIF
NELVEGMNAR GMNHATDLGW MIDASHNVKD PLEDLLQSVE AIMIAYAQAL LVDTKALQTA
QQNNDVVAAQ EILQAAYRMD VRPLVAQARL QAGGVLQPVA FYREFKIREQ LIKERGLKTV
ATGL
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