| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_4783 |
|---|
| Symbol | |
|---|
| ID | 8360959 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 5953635 |
|---|
| End bp | 5954645 |
|---|
| Gene Length | 1011 bp |
|---|
| Protein Length | 336 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 644966933 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_003124418 |
|---|
| Protein GI | 256423765 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.000597107 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 0.813715 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGAGTAGTG GGGGATATCG TTATGGGTTT AATGGGAAGG AGAATGATGA TGAGGTGAAG
GGCGAGGGGA ATCAGCAAGA TTATGGAATG CGGGTGTATG ATCCGAGGAT AGGTAAGTTT
TTGAGTGTGG ATCCGTTGAG TGTAGAGTAT CCATGGAATA GTACTTATGC TTTTGCAGAG
AATGACGTTA TTAGAAGTAT TGATCTGGAT GGCGCTGAAA AGAGAGTAAA AACATACTCT
TATACGATGT CGGGCGGTAA GACAGTACTA ACAGTCACTG ACAACGTTTG GAAGCAACAA
ACAGATATAA GCATTCATCT TCTAGGAGCA CCTCAGACAG ATAAACAGAT AGCCGCTCAT
AGTGCTATAA CATATCAAAA AGTGCCCAAA CCAGATAATG GTTCGTTTGC GTTCTTTGAG
TTTTCTCCTG AACTAAAGAA AGCCAATTAT GGAAAATATA CCTATACGGA CAATAATGGA
AAGCAGCAGG TTCAGTATTT TTCAAGTGAG GAGTTGCAAT TTAGAATTGA TGAGATAGAA
GCGGCGAAGC AGCGGTTAAA TAAGGATATA AATATTGCCG CAGCAAGTGC AAACTTAGTA
GGAGCTGGTA TGCTTGCGAA AGCAGAACTA AGTTCCGTGC CTAAAGAGCC GTATTTATAT
CGAGGTTCTA TGAGTGAACC TTCAAATAAG TTTGTGAATG GTTTTAAAGC AAAAGGAACG
AATTATGATT TATGGGAGCA TCTACAATCC AATCCCAAGA ATAGTGCTTA TATATCAACT
ACTAAATTGA AGGATCTTGC GGCAGATTAT GGATACTTTG TATATGAAAT TAGATTTCAA
AAAAATGGGA TTGATATCAA TGCAAAATAT GGGACGTCAA ATAAATGGCA TTATGAAAAC
GAAGTTTCAG TCCCTGATCA AATAAAAAAC ACAGATATCA GGGGGGCCTA TAAGGTTAAT
TCGGATGGAA CGCTCGGAGA TTTTATTCCT AACCCTAATT TTAAAAGATA G
|
|---|
| Protein sequence | MSSGGYRYGF NGKENDDEVK GEGNQQDYGM RVYDPRIGKF LSVDPLSVEY PWNSTYAFAE
NDVIRSIDLD GAEKRVKTYS YTMSGGKTVL TVTDNVWKQQ TDISIHLLGA PQTDKQIAAH
SAITYQKVPK PDNGSFAFFE FSPELKKANY GKYTYTDNNG KQQVQYFSSE ELQFRIDEIE
AAKQRLNKDI NIAAASANLV GAGMLAKAEL SSVPKEPYLY RGSMSEPSNK FVNGFKAKGT
NYDLWEHLQS NPKNSAYIST TKLKDLAADY GYFVYEIRFQ KNGIDINAKY GTSNKWHYEN
EVSVPDQIKN TDIRGAYKVN SDGTLGDFIP NPNFKR
|
|---|
| |