| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_4560 |
|---|
| Symbol | |
|---|
| ID | 8360733 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 5701862 |
|---|
| End bp | 5705803 |
|---|
| Gene Length | 3942 bp |
|---|
| Protein Length | 1313 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 644966715 |
|---|
| Product | histidine kinase |
|---|
| Protein accession | YP_003124203 |
|---|
| Protein GI | 256423550 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.498007 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.022289 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGGTGGA CAATGATGTT ATGGCTATGC CTTGCAATGA ACACCCTGTT CGCTGCCGGT
GAGCCACTGA AGAATCTCAA TATAGAGAAT GGCCTATCCA ACAACGCTGT ATTAAACGTT
TACCAGGATT CCAAAGGTTT CATGTGGATT GGCACCTATG ATGGGCTGAA TCGTTATGAT
GGATACAAAT TCAAGATCTA CAGAAACAGG ATAGGAGATT CCACGTCTCT CATAGATAAC
GGTATTTATA CAATTGATGG AGATACTGAG CACCGCTTAT GGATCGGTGG CAGGAAAGGC
ATTAGTGTGT TTAACCCGGT AAATGAACAT TTTTCCGCAG CAACATTTGC CAACGGAAAA
CCTGTACAGG GGAACATCCA TATCATCAAA GCGGGTAACG ACGGACTTGT GCTTGTAGGC
TCTGAAAATA ATGGCCTCCT GCAATTCAAC CGCCTGCCCG GTACGGGCAG ACAGATCCCT
CTTGAAAACA GTACCAGTTA CGAAGTTACC GCTATTGACT TCACACCTGA TAAAAGCGCC
GCATACATAT TTGTACAACA TATAGGGCTT TGCCGCTATG ACTGCAGTAC CGCAAAGATT
ACAGTAATCA GCCGTATAAT GACACAGGCC AATTGCCTGA AATCTGATAA AAACGGGATG
CTCTGGATAG GCACAGACCA GGGGTTATTC AGCTATAGTA ATGGCGTATT CTCTGCTAAC
TATCTTGAAG AAAACAGTAA AATAGTCAAT CTCTGTGCTG ATCAGCAAGG CGCTATGTGG
GCAGGCTCTG ATGGACACGG TATTTTTATT GCCAGAGATG GTAAAGCAAC GCATAGTAGC
CAGACCCTGA ACAGTAATGC CGTCTATTCC ATCTGTGAAG ACAGGGACGG TCGTAAATGG
ATCGGTACTT TGAGAGGAGG GATTAATATC ATTGATGCGC GTAAGCGACT GTTTGAGCAA
TACGCATTTA CAGGTACTGT AGACAATTTC ATCCTGTCCT TCTGCGAAGA TGGGCATAAA
GGCGTATGGG TGGGAACAGA TGGTGGCGGC CTGAAATACT GGGATCGTGA AAAAAATACC
TTTAAGATAT ATAAATACAG TCCTTCCGCT CCGGGTGCTA TCAGCAGTAA TTTCATAACC
AGTATGGTGC AGGACGCACA AGGCGATCTC TGGATCGCTA CCTGGTTCGG AGCACTGAAC
AGGTACAATC GCCAGCGGGA TGCGTTTGAA CATTTCTCCT GCTTCAATCC CGTTACAAAG
TCGGAGGAAA ATAATGTCTG GGGCATTTAT AAGGACGCCG GAAACCAACT CTGGGCCAGC
ACTACCAACA ATGGTACCCT ATATCTTTTT AACCGGGAGA AAAATAACTT CGAACTCTTT
GATAAAACAC TGGTCAATAT CCAGTGTCTT GCAGAAGACC ATCATGGTAA TATGTGGGGT
GGTAACTATT CTTCCCTCAT AAAAATCGAC CGGGATCACC GGCAGCATCA GATCTTCTCC
ATCGGTAATA CGGTACGTGT CATCCATGAA GATAAAAAAG GACAACTATG GGTTGGTACA
GAAGGTGGCG GATTGCTGTT GGTAGACCGT ACCACCGGGA AATTTACCCG TTTTACAGAG
GCCAACGGTT TGCCCAGTAA TACCATCCTG CGCCTGCTGG AAGATGATAA AGGCTTTCTC
TGGTTAAGTA CCTTCAACGG ATTGGCAAAA TTTGATCCTG TACAACACAC TGTGCGTAAC
TTTTCCCGTT CTGACGGATT GCAAAGCAAC CAGTTTGCCT ATAACGCCGC CCTGAAGTTA
CAGTCAGGCG AATTCCTTTT TGGGGGGATC AAAGGCTTCA ATATTTTTCA TCCGGATAGT
ATCTATGAAC GCAGTAGTTT TGCCCCGGTA TTCCTGACGG GTATCCGCAT TAATAATAAC
TCAGTAGAAC AGCAAACGGA CCTCATTTCC GCCCGTTCGC AGGATAATAT AGAAGAAGTC
ACCATTCCTT ATAATAAAGC CGCTATCTCC CTGGATTTCG TCTCACTGGA ATATACTTCC
CCTGATAAGA TAAGTTACAC CTATCTCCTG GAAGGCTGGG ATAAGAACTG GAACGATGGC
GGGGAAGCCA GGACGGCGAA TTATACCCGT TTGCAGGAGG GACGCTATAT ATTTAAGGTA
CGGGTGACCA ACGCGGATGG TAAATGGGGC CAGGAATTGC AATTACTAAA AGTAATCGTA
TTGCCCCCCT GGTACAGAAC CCCCTGGGCC TATATGGCTT ACCTGATATT GGTCTCCATG
CTGATCTATG CATATATTCA ATACAAGTCC CGACAGGAAA GACTGAAATA TGAAATCAAA
CTGGCGCACC TGGAGAGCGA AAAAGAAAAA GAGATCAATG AAAAGAAACT CTCTTTCTTT
ACCAATGTCT CCCATGAATT CAGAACACCG CTGACGCTGA TCATCAATCC GCTGAAAGAA
CTGAAAGACA ATGAAAACCT GGGTGTTGTA TATAGAAATG CCCGGCGTTT GCTGAGTCTT
GTCGATCAGT TGCTGCTGTT CCGCAAAGCC GGTAATGACG AAGAACTGAA AGTCGCCCGC
CTTGATATTA TCGCACTCTG TAATGAGGTC TTCCTCTGTT TCACCCAGCA GGCAGAAACA
CGTCATATTG CCTATGAATT TATTACTGCG AATGAGACTG CTGACATTTA CGCCAACTAC
GAACAGATAG AGATCGCACT TTTTAACCTG CTCTCCAATG CTTTTAAGTT TACACCAGAT
GGGGGAAAAA TAAGTTGTAC CGTAATATGT ACCGATCTGG AAGTGACGAT CACCGTAACA
GATTCTGGTT CAGGTATACC TGAACATCTG CAGAGCAGGA TCTTCGATAA ATTCCAGCAG
GGAGACAGTA AACAGTCCGG ATTCGGAATC GGTCTGTATC TTGTCAGGCA GTTCATAGAG
AACCATCGGG GCAGCGTTAC GTTTAAAAGT ACCCTCCATC AGGGAACGGC TTTTTCTATC
TACCTGCAGA CAGGCGCCGC CCATTTTGAG CCGTCTCAAC TGATGGAAGA GCCGGTGAAG
AAATCAGCTA TACTGGATGA ATTAATGGAA GAAGTCTATA GCAAGCCGGC AAAAACAGCT
GTATCTGAGG AATTGATCAC AGAAAAGAGA TCAATGCTGC TGATTGACGA TAATGCGGAA
ATAAGGGGCT ACCTCCACCA GCTGTTCTCA GATAAATATA TTGTATACGA GGCCGAAAAC
GGGGCAGACG GATTTGCCGC TATCGAAAAA TATATGCCTG ATCTGGTGAT CAGTGATGTA
CAGATGGATG GTATGGACGG GCTCGCCCTC TGCCGGAAAA TAAAGGAAAC AGAAGCACTC
TGCCATATTC CGGTTATTCT CCTGACAGCC GCGTCTTCTC CTGCGTCCCG ACTGGAAGGT
ATTGAAGGCG GGGCAGACGA TTATATTACC AAACCTTTTG ACAACGACCT CTTACTGGTA
AAAGTGCAGA CCATCATCAG AAACAGGAAC CTCCTCAGAG AATATTTTCT TGACCGGATC
ACCCTGAAGC GAACGGATCT GAAAGTACCC GCCGAATACC AGGACTTTCT AAAGAAGTGC
ATCGAGATCG TAGAAGACAA CCTTGGAAAT GAAGATTTCA CCATTAAAAC CTTCACACAG
GCTATCGGTA TGAGCCACTC CAGTCTGTAT AAGAAGGTAA AATCCATCTC CGGACAAACC
ATTAATGCCT TTATCCGGTC TATCCGTTTG CGGAAAGCAG CCGTTTTAAT GCTACGGGAG
AACTATACCG TCAATCAGGC CGCTTTCCAG GTCGGAATAG GCGATATCAA GTACTTCCGG
GAGCAGTTTT TCAAATTGTT CGGGATGAAT CCGTCCGAAT ATGTAAAGAA ATACCGGCAC
TCCTTTAATG AAGACCTGAA CATTGTCAGA ACAGACAATT AA
|
|---|
| Protein sequence | MRWTMMLWLC LAMNTLFAAG EPLKNLNIEN GLSNNAVLNV YQDSKGFMWI GTYDGLNRYD
GYKFKIYRNR IGDSTSLIDN GIYTIDGDTE HRLWIGGRKG ISVFNPVNEH FSAATFANGK
PVQGNIHIIK AGNDGLVLVG SENNGLLQFN RLPGTGRQIP LENSTSYEVT AIDFTPDKSA
AYIFVQHIGL CRYDCSTAKI TVISRIMTQA NCLKSDKNGM LWIGTDQGLF SYSNGVFSAN
YLEENSKIVN LCADQQGAMW AGSDGHGIFI ARDGKATHSS QTLNSNAVYS ICEDRDGRKW
IGTLRGGINI IDARKRLFEQ YAFTGTVDNF ILSFCEDGHK GVWVGTDGGG LKYWDREKNT
FKIYKYSPSA PGAISSNFIT SMVQDAQGDL WIATWFGALN RYNRQRDAFE HFSCFNPVTK
SEENNVWGIY KDAGNQLWAS TTNNGTLYLF NREKNNFELF DKTLVNIQCL AEDHHGNMWG
GNYSSLIKID RDHRQHQIFS IGNTVRVIHE DKKGQLWVGT EGGGLLLVDR TTGKFTRFTE
ANGLPSNTIL RLLEDDKGFL WLSTFNGLAK FDPVQHTVRN FSRSDGLQSN QFAYNAALKL
QSGEFLFGGI KGFNIFHPDS IYERSSFAPV FLTGIRINNN SVEQQTDLIS ARSQDNIEEV
TIPYNKAAIS LDFVSLEYTS PDKISYTYLL EGWDKNWNDG GEARTANYTR LQEGRYIFKV
RVTNADGKWG QELQLLKVIV LPPWYRTPWA YMAYLILVSM LIYAYIQYKS RQERLKYEIK
LAHLESEKEK EINEKKLSFF TNVSHEFRTP LTLIINPLKE LKDNENLGVV YRNARRLLSL
VDQLLLFRKA GNDEELKVAR LDIIALCNEV FLCFTQQAET RHIAYEFITA NETADIYANY
EQIEIALFNL LSNAFKFTPD GGKISCTVIC TDLEVTITVT DSGSGIPEHL QSRIFDKFQQ
GDSKQSGFGI GLYLVRQFIE NHRGSVTFKS TLHQGTAFSI YLQTGAAHFE PSQLMEEPVK
KSAILDELME EVYSKPAKTA VSEELITEKR SMLLIDDNAE IRGYLHQLFS DKYIVYEAEN
GADGFAAIEK YMPDLVISDV QMDGMDGLAL CRKIKETEAL CHIPVILLTA ASSPASRLEG
IEGGADDYIT KPFDNDLLLV KVQTIIRNRN LLREYFLDRI TLKRTDLKVP AEYQDFLKKC
IEIVEDNLGN EDFTIKTFTQ AIGMSHSSLY KKVKSISGQT INAFIRSIRL RKAAVLMLRE
NYTVNQAAFQ VGIGDIKYFR EQFFKLFGMN PSEYVKKYRH SFNEDLNIVR TDN
|
|---|
| |