Gene Cpin_4302 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_4302 
Symbol 
ID8360475 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand+ 
Start bp5361354 
End bp5361932 
Gene Length579 bp 
Protein Length192 aa 
Translation table11 
GC content44% 
IMG OID644966464 
Producttranscriptional regulator, TetR family 
Protein accessionYP_003123952 
Protein GI256423299 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.985761 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value0.0925574 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGAACAA AAGATTTTGA CGAGAATGAG ATACTGAGAA AAGCCATTAC CATCTTCTGG 
CAAAAGGGCT ATAACGCCAC GTCGTTATAC GATCTAATAG AAGGACTTGG TATAGGGCGT 
TCCAGTATTT ATCATAGCTT TGGTGATAAA CATAATCTTT ATCTGAAAGC GCTCGACCTC 
TATCAACGGG AGGCGACAGC CAGAATTACT GCTATACTGA ATAGCGGTCC TTCTGTAAAA 
GAAGCAGTAG CTAAGCTGTT GCAAACGATT ATATCTGAGA TCGTTGCTGA CGAGCATTCG 
AAAGGATGCT TCAAAGTAAA CAGCGAGGTA GAACTTGCCC CCCATGATGA GGCCACCAAA 
AAGATCCTCT GTGACGATAA CGCTATCATT GAAGATGCCT TGTACCAGGC TTTTCTAAAA 
GGTCAGAAAG ACAAGTCAAT CAGTGCATCT AAAGATCCCC AGGCGCTTAC CCGCTTTATT 
TGTAACACCG TAGCAGGTAT GCGGGTGTAT GCAAAGTTCA GAAGCGACCG GCCCTTTTTT 
GAGGACATTG CCGAAACAGC ATTGTCAGCT CTTGATTGA
 
Protein sequence
MRTKDFDENE ILRKAITIFW QKGYNATSLY DLIEGLGIGR SSIYHSFGDK HNLYLKALDL 
YQREATARIT AILNSGPSVK EAVAKLLQTI ISEIVADEHS KGCFKVNSEV ELAPHDEATK 
KILCDDNAII EDALYQAFLK GQKDKSISAS KDPQALTRFI CNTVAGMRVY AKFRSDRPFF 
EDIAETALSA LD