Gene Cpin_4279 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_4279 
Symbol 
ID8360452 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp5342614 
End bp5343099 
Gene Length486 bp 
Protein Length161 aa 
Translation table11 
GC content39% 
IMG OID644966441 
Producttranscriptional regulator, MarR family 
Protein accessionYP_003123929 
Protein GI256423276 
COG category[K] Transcription 
COG ID[COG1846] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value0.0560787 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTCATTT CATTAAATTG TATATGCACA AATAAGATGG CTACAAAAGA TCAGGTATTC 
TCTTATATAG AGCCAGAGGA AAACAGCGGA TACTTGCTTT GGCAAGTGAC AATGCAATGG
CAGCTAAGTA TGAACAGAGC ACTCGGAAAA ATGGAGCTCA CGCTAACGCA ATTCTCCTTA
ATGGCGGGTC TCTACTGGTT GAGTGAAAAA AAAGGGGCAG TTACCCAGCA GCAGTTGGCC
GATTACGCTA ATACCGATAA AATGATGACT TCTAAAGTAT TAGCGGTATT AGAGAAAAAA
CAAATCGTAG AAAGGGTGAA AGACCCCGGT GATAGCCGTG CGAAACAATT AAAAATAACC
GATAAAGGTG TGGAGATATT GAGGGAGGCG TATCGGATTG TTAAACAGGT GGATGATGTG
TTTTTTAAAA ACGTGGTGAA AGATAAAATA GTATTCGATG ATTTACTTGT GAGATTAATA
AAGTAG
 
Protein sequence
MFISLNCICT NKMATKDQVF SYIEPEENSG YLLWQVTMQW QLSMNRALGK MELTLTQFSL 
MAGLYWLSEK KGAVTQQQLA DYANTDKMMT SKVLAVLEKK QIVERVKDPG DSRAKQLKIT
DKGVEILREA YRIVKQVDDV FFKNVVKDKI VFDDLLVRLI K