| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_4023 |
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| Symbol | |
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| ID | 8360196 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | - |
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| Start bp | 5005359 |
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| End bp | 5007140 |
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| Gene Length | 1782 bp |
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| Protein Length | 593 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 644966196 |
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| Product | glycoside hydrolase 15-related |
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| Protein accession | YP_003123685 |
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| Protein GI | 256423032 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3387] Glucoamylase and related glycosyl hydrolases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.000792533 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.121588 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAAAGAC ATACGTATCA GACAGGCATT ATTGGCAATT GTGCGTACCT CGCACATGTC
AATCTAAACA CGAACATAGA CTGGCTTTGC TGGCCACGAA TGGACAGCTC CTTTATCTTC
GGCGGTATGC TGGATAAGAA TAAGGGGGGA GAATTCTATA TCCGCCCTTC GGGTGAGTAT
ACGTCCAAGC AGTACTACCT GGAGAACACC AATGTACTGT GTACGGAAAT CACCAGTGAG
AGTGGAAAGT ATCGTATTAC GGACTTTGCT CCCCGTTTTC ATCAGTATGA ACGGTATTTC
AAACCCCTCA TGCTGATACG CAAGATAGAG CCACTGGAGG GCAATCCACG TGTGAAAGTG
AAATGTAAAC CCGTATGTGA TTACGGCAGT GGTTTTCTGA AGGCCCAGCG GGGTAGCAAT
CACATTGAAT TCCTGGGATG TGAGGAAACC TTACGCCTCA CCACCAACAT TCCCATCAGT
TATCTTTTTG AAGAAGAATT TTTTGTCCTG AATGATGAAA AATACCTGCT GCTGACCTAT
GGCCATCCAT TGGAGGCGCC ATTGAATGCC ACAGCAGAGC GGTTTCTCCG TGAAACTACC
CTCTACTGGC GTACCTGGAT CAAACATTCC AACATCGCCA ATTTCTACCA GCCGGCCGTT
ATCCGTTCTG CCCTCACCCT GAAGATTCAC CAGTATGAAG ATACCGGCGC CATCATTGCC
GCCAGTACGA CCAGTTTGCC GGAATACCCG GGTAGCGGAC GTACCTGGGA TTATCGTTAT
TGCTGGTTGC GCGATACTTA TTACGTTATT ACCGCACTGA ACCATATAGG GCATTTTGAG
GAAATGGAGA AATATTTCAG TTATGTGGCT GATATCTCCT TCTCGGGTGA CTACCGTTAT
CAGCCTTTAT ATGGCATTAC AGGCAAAAAG AACCTTATAG AGCAGATATT GCCTCACCTG
GATGGTTATG AGGGGAATCA GCCCGTACGC ATCGGTAATC AGGCGTATGA GCATATACAG
AACGACATCT ACGGACAGGT ACTGATTTCT ATGCTGCCCC TGTATACGGA CCATCGTTTC
GTCTTTTCAG AAAGAAAAGA TTCGGCGTGG TGGCTGGAAT ACCTGCTCAA TAAGATCGAA
CACACAATTG ATGAAAAAGA TGCGGGCATA TGGGAGTTCC GCAACTTCGC AAATATTCAC
TGTTACAGCA ACCTGTTCCA GTGGGCCGGT TGTGCTGCAG CAGAGAAAAT GGCGCGTACC
ATCGGGAATC AGCAACTGGT AGAAAAAGCC ATTGCATTAA AAGACCGTGC GGCAGCACAT
ATTGAAAGCT GTTACGACCC TGTCAGGAAA GTATATACCA ATGCAGCCGG CAGTCAGCAT
CTCGATGCAA GTACTTTACA GCTGATCATG ATGAACTATC TGGATCCGGC TTCAGAAAAA
GCACGCGATC ACCTGGCGGC ACTGGAGAAA GAACTGAAAA CGCCACAGGG ATTATTCTAT
CGTTATCTGC ACTCAGATGA TTTCGGCAAA CCGAAAGCTA CCTTCCTCGT CTGCGCATTC
TGGTATGTAG AGGCATTGGC CTGTGTAGGA CGTATTGATG ATGCAGTGCG TGAGTTTCAG
AACCTGCTGC AATATTCCAA TCACCTGCAG TTATTCAGTG AAGATGTGGT AGAAGAGAGT
GGCAGCCAGT GGGGTAACTT CCCGCAGGCC TACAGTCATG TGGGACTGAT GAATGCTGCG
TACCGGATAT CCATGAAACT GGATGTACCG ATTTTTCTTT AA
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| Protein sequence | MERHTYQTGI IGNCAYLAHV NLNTNIDWLC WPRMDSSFIF GGMLDKNKGG EFYIRPSGEY
TSKQYYLENT NVLCTEITSE SGKYRITDFA PRFHQYERYF KPLMLIRKIE PLEGNPRVKV
KCKPVCDYGS GFLKAQRGSN HIEFLGCEET LRLTTNIPIS YLFEEEFFVL NDEKYLLLTY
GHPLEAPLNA TAERFLRETT LYWRTWIKHS NIANFYQPAV IRSALTLKIH QYEDTGAIIA
ASTTSLPEYP GSGRTWDYRY CWLRDTYYVI TALNHIGHFE EMEKYFSYVA DISFSGDYRY
QPLYGITGKK NLIEQILPHL DGYEGNQPVR IGNQAYEHIQ NDIYGQVLIS MLPLYTDHRF
VFSERKDSAW WLEYLLNKIE HTIDEKDAGI WEFRNFANIH CYSNLFQWAG CAAAEKMART
IGNQQLVEKA IALKDRAAAH IESCYDPVRK VYTNAAGSQH LDASTLQLIM MNYLDPASEK
ARDHLAALEK ELKTPQGLFY RYLHSDDFGK PKATFLVCAF WYVEALACVG RIDDAVREFQ
NLLQYSNHLQ LFSEDVVEES GSQWGNFPQA YSHVGLMNAA YRISMKLDVP IFL
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