Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_3984 |
Symbol | |
ID | 8360157 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | - |
Start bp | 4957031 |
End bp | 4957633 |
Gene Length | 603 bp |
Protein Length | 200 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 644966158 |
Product | transcriptional regulator, TetR family |
Protein accession | YP_003123647 |
Protein GI | 256422994 |
COG category | [K] Transcription |
COG ID | [COG1309] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.562971 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 33 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGGTATTA GTGATCGTAA GGAAAGGGAA AAGCAGGAGA TGCGTAAACT GATCATCGGC ACCGCGATGG ACATGTTCAT CCATGATGGA TATGAAAAGA CCTCTATCAG GAACATAGCT GAAAAGATAG AATATAGCCC TGCCACCATT TACCTCTATT ATAAAGACAA GGACGAACTG TTGTACGAAG TACAGGGAGA AGCCTTTGGA GAATTATACA AAGCCTTCGA AAAAGAAGCC ACCTCCACCG ATCCGTTGGA AAAGCTGGAA CAATTGCTCC ACTCCTACGT AAAATTCGGC TTTGAACATC CGGACCTCTA TGACCTGATG TTTATACTCC GCTCACCCAT GAAAGCAGTC AGCGAAGACT GGCCCAATTG TGATGAGTCA TTTGACTTCC TCTTAAAGAC AGTAACACCT TGTATGCATC AGCTACGCTT CACCGATCCC GGCGTGGCAT CACTGTCCAT CTGGGCATTA GGACACGGAC TCATTTCCCT CTTCGTCAGA CAACGCATCA AAGTAATGCA ACTGACTGAA GAAGAACAAC GGGCATTGAT CACCAGTACC GTAGACGAAT ACCTCCGACT CATCAGGAAA TAA
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Protein sequence | MGISDRKERE KQEMRKLIIG TAMDMFIHDG YEKTSIRNIA EKIEYSPATI YLYYKDKDEL LYEVQGEAFG ELYKAFEKEA TSTDPLEKLE QLLHSYVKFG FEHPDLYDLM FILRSPMKAV SEDWPNCDES FDFLLKTVTP CMHQLRFTDP GVASLSIWAL GHGLISLFVR QRIKVMQLTE EEQRALITST VDEYLRLIRK
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