Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_3808 |
Symbol | |
ID | 8359980 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | + |
Start bp | 4789024 |
End bp | 4792407 |
Gene Length | 3384 bp |
Protein Length | 1127 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 644965981 |
Product | TonB-dependent receptor plug |
Protein accession | YP_003123471 |
Protein GI | 256422818 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.0159841 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 0.577345 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGGAAT TTTATGTACG TCATATGCGA CTTCAGGAGA AATATGCCAG CATCCTATAT CTGTTGCTGC TTTTTTCGTC ATTGTTGCTT ACTGAAGGCG TTCGTGCACA GCATAGCTCT ATGCTGGACG GTAAGTTTGT GTCTGTCACT ATCAGGCGGC AGCCACTGTC AGCTATTTTG GACACATTAC AGGCAAAGAC GGGTGTTTTA TTGAATAGTT CTCTCAACGG GGAAGAGATA TATAGTATAG ATGTAAATAA TAAATCACTG CGCTTTACCC TGGAAAAGCT ATTTCGGAAA AAACAGGTAA AGGTGCAGGA GCTGGTAAAC CTTAATATGG TCAAGATCCA GCCGCGCGAG ACGGCAGATA AAATGGACAA AAATGCTGAT ACCGGTAAGT CTTTATCACC GGATGTACCC GTTAACGTTT TACATTATCG TATAACGGGC CAGGTGATTG ACGAGGATGG CCTTCCACTA CCGGGCGCTA GTATTCAGGT GAAAGGAAAA AAAGAAGGGG CGGGTTCAGA TACCGCAGGA AACTTCACTT TCCTCTCCAC AGCAGCGAAG CCGCATGTAA TGGTCACTTT TATGGGATAT GAGGGACAGG AGCGTCAGCT GCAGACCGGT CAGAAAGAAG TAATTATTCT CAGACAGGCG GATAACAGCC TGGATGGGGT AACGGTAGTA GGGTATATGG ATAACTCAAA CAGGTACTCT TCCGGTTCCG TATCCAAGGT AACGGCGAAG GACATTGAAG GCAGTGTCAC CGGCAATCCG CTTTTGTCCA TACAGGGACG CATACCCGGT ATGGTGATCA CACAATCCAG CGGTGTGACC GGCGCTGCCA TTAAAGTAAA TCTCCGGGGC ATCAACTCAC TATTCAACGG GTCTGATCCT TTATATATTG TGAACGGTAC ACAGTTGCCC GGTTATGGGG AGCAGATCAA TCAGCTGCCT TCCATTGCCT CCCAGAATGA GGATGGCGGT ATAAGTCCGT TTACCATCTT CGGGCTATAT GATATTGAAT CCATGTATAT CCTGAAAGAT GCGGTCGCGA CTGCTGCCTA TGGTAGCAGA GGAGCTAACG GCGTGGTGAT TATTAATACG AAAAAAGGAG AAAAAGGGAA GCTGAAAGTC ACGGTGGATT ATATGTACGG CCTCAACAGC GTCTCCCGCA AATTATCCCT GCTGAATACG CAACAGTACA TCAGTATGCG GAAGGAGGCA TTCCGGAATG ATACAATTGA TCCTAATAGT ATGCCCGGAA CGCCTGGTTA TGCGCCGGAT CTTACCTTGT GGGATACGAC CCGGTATACA GACTGGCAGA AAATGCTGAG AGGCAGACTG GCCGGCATGA ATGACCTGAA CATCAGCATC TCCGGTGGCA CCAAGTATAC AAGATTGTTA CTGAGTACGG GTATCTACCG GGAAGGGACC GTTTATTCGA AAGATATGTC CTATCTGCGT AGTACCATCA ATCTGGCGGC AGATCATCAG TCTAAAGACG GGCGGTTTAA ACTGGGCGTA TATGCGAACT ATTCCGTAGA TAACAACCAA TTGTTCAGTC CAACGTCTTC GGGAGAAACG TTAGCGCCGA ATGCGCCAAA GCCTTATGAT GCGCATCATA ACCTGGTGTG GCAGGAAGGC GGAGAGTCTT TTGCCAATCC CATGGCGGAA AGACTGAAGC GCTATTCCAT GGTCAAGAAT AACCTGATCG TGAATGTGAC ACCTTCTTAC GAGATCCTGC CTGATCTGCG CCTGAAAGCC AATATCGGTC TGACAGGCGT CAACGTATAC GAAAACAGCT TATTACCTAT CGCGTCCCAG AATCCCTACA CCGATAGTAC GGTTACCGGT AGCGCTTCTT TTGCTACCGG TAAGTATAAA AGTCTGATGT TCGACCCTGT ACTGGAGTTT AAAAAGCATC TCAAACAGGG CGATTTTACT TTATTGAGTG GTTATTCATT TCAACATGCG ACCTCTGATA TTTCGTCCGT TACCGGATAT GGATATACCG ATGATGTATA CCTCCGTTTT CTTGACCGGG CGCCGCTAAA GAACAATAAT TTTACGCCGG AATCGAGTCA GTACAGGTAT GGCGCTTTCT TTACGCAGTT CAACTATAAA TACAATCAGA CCTATATTCT TGATATGACT TTCCGCCGGG ATGGTAGTAG TAAGTTCAGT CCGGAGCGCC GTTTTGGTAA TTTCTGGGCA ACCGGCGTCG CATGGATCTT TTCAAAAGAA AAGTTCTTTC AGCCGCTGAA CAGTTTTGTG CGCTATGGTA AACTACGCAG TAGTATTGGT GTCACCGGTA ATGATAAAAT TGAAAACTAT AAGTATCTTG ATACCTGGTC GCCTGTATCC GGCGGACCTT ACCAGGGTAC ATCCGGACTC AGACCCGATG CATTGTATAA TCCTGCCTAT TCCTGGGAAA CCTGCCGTAA AATAGAATTC GGACTGGACC TGGAGTTTAC ACCGGTGGAT ATGTATATGT CGCTGGTGTA TTTTACCAAC CGCAGCTCCA ATCAGCTGGT GAGGTATAAT CTGCCTTCAC AGACAGGTTT TAGCGATATT CTGAAGAATA TAGATGCTGC TATCCGAAAC AGTGGCTGGG AGTTTACGTT CGATGCCACA ATTGTCAAAA GCGGCGATTT TAAGCTGTTT ACAGGCGTTA ATCTGACCGT GCCGAGAAGT AGGCTACTCC GCTTTGAAAA GTTGTCTACA TCTGCTTATT ATGGCTCTTA CGTGATTGGT AAGTCAGTGA AGGTGCTCAA TAAATTACAT GTAGATGGGG TAGATCCTGC AACAGGTCTT TTTATCATTC AGGACAGGGA CGGCGCCAAT GGCTACACTG TCAATGATTA CCAGGTAATA GGTCATCTGG ATCCTTACTG GTTCGGCGGA TTTCGCCTGG GGGTGAGCTG GAAGGCATTT GAACTGAACC TGCTGGGCGA TTTCAGAAAA CAGATGGCTC CCAACTATCT GTATGCGACT TATATCAGAA ATGCGCTTCC AGGAGCGGCG GTTAATCAAG CTACAGAAGT ACTTGACCGC TGGAGTCAAT ATGGCGATAA TGCTATTTAC CCGAGATTTT CCACGATGTC CGGCGGAGAT GTATATAGCG ATCGTACCCG TATTATTAAC TCTGACAAGG CGTATTCAGA CGCCACTTTC ATGAAACTGA GAAACGTTTA CATCTATTAT ACATTGCCTG CTCGTTTGTT TTCAAAGTTA AAACTGGAGA ATATCAGGAT CTATTGCAAG GCACAGCATC TATTCACTAT TACGCGGTAT AAGGCGGGTG ATCCTGAAAC TGCGAGTCCG TTTGCGCTGC CTCCGCTAAG AACGGTGGCG ATGGGCGTAA GGGCGTCTTT TTAA
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Protein sequence | MKEFYVRHMR LQEKYASILY LLLLFSSLLL TEGVRAQHSS MLDGKFVSVT IRRQPLSAIL DTLQAKTGVL LNSSLNGEEI YSIDVNNKSL RFTLEKLFRK KQVKVQELVN LNMVKIQPRE TADKMDKNAD TGKSLSPDVP VNVLHYRITG QVIDEDGLPL PGASIQVKGK KEGAGSDTAG NFTFLSTAAK PHVMVTFMGY EGQERQLQTG QKEVIILRQA DNSLDGVTVV GYMDNSNRYS SGSVSKVTAK DIEGSVTGNP LLSIQGRIPG MVITQSSGVT GAAIKVNLRG INSLFNGSDP LYIVNGTQLP GYGEQINQLP SIASQNEDGG ISPFTIFGLY DIESMYILKD AVATAAYGSR GANGVVIINT KKGEKGKLKV TVDYMYGLNS VSRKLSLLNT QQYISMRKEA FRNDTIDPNS MPGTPGYAPD LTLWDTTRYT DWQKMLRGRL AGMNDLNISI SGGTKYTRLL LSTGIYREGT VYSKDMSYLR STINLAADHQ SKDGRFKLGV YANYSVDNNQ LFSPTSSGET LAPNAPKPYD AHHNLVWQEG GESFANPMAE RLKRYSMVKN NLIVNVTPSY EILPDLRLKA NIGLTGVNVY ENSLLPIASQ NPYTDSTVTG SASFATGKYK SLMFDPVLEF KKHLKQGDFT LLSGYSFQHA TSDISSVTGY GYTDDVYLRF LDRAPLKNNN FTPESSQYRY GAFFTQFNYK YNQTYILDMT FRRDGSSKFS PERRFGNFWA TGVAWIFSKE KFFQPLNSFV RYGKLRSSIG VTGNDKIENY KYLDTWSPVS GGPYQGTSGL RPDALYNPAY SWETCRKIEF GLDLEFTPVD MYMSLVYFTN RSSNQLVRYN LPSQTGFSDI LKNIDAAIRN SGWEFTFDAT IVKSGDFKLF TGVNLTVPRS RLLRFEKLST SAYYGSYVIG KSVKVLNKLH VDGVDPATGL FIIQDRDGAN GYTVNDYQVI GHLDPYWFGG FRLGVSWKAF ELNLLGDFRK QMAPNYLYAT YIRNALPGAA VNQATEVLDR WSQYGDNAIY PRFSTMSGGD VYSDRTRIIN SDKAYSDATF MKLRNVYIYY TLPARLFSKL KLENIRIYCK AQHLFTITRY KAGDPETASP FALPPLRTVA MGVRASF
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