| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_3654 |
|---|
| Symbol | |
|---|
| ID | 8359821 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 4588637 |
|---|
| End bp | 4590274 |
|---|
| Gene Length | 1638 bp |
|---|
| Protein Length | 545 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 644965823 |
|---|
| Product | Methylcrotonoyl-CoA carboxylase |
|---|
| Protein accession | YP_003123317 |
|---|
| Protein GI | 256422664 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG4799] Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.000718459 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.127593 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATGCAC AGCAACTGGA CATGAACCGG AACGAAGATG CGATGCGCAA ATCTCTTAGC
ACGCTCAGAC AACGTCTCTC CGTCATCGAA CAGGGAGGAG GTAAAAAGAA CCTCGAAAAA
GTGCGGCAGA GAGGAAAGTT GACCCCGAGA GAAAGAATTG CTTATCTGCT GGACAAAGAC
ACCCCTTTTA CAGAAATCGG CGCCTTTGCC GCTTATGACA TGTACGCTGA GCATGGTGGT
TGTCCTGCAG CAGGTACTGT CGGTGGTATT GGCTATATCA GCGGCCGTCA GTGTATGATC
GTCGCCAATG ATATGACCGT GAAAGCCGGC GCCTGGTTTC CGCTGACAGG CAAAAAGAAC
CTGCGCCTGC AGGAGATTGC CATGGAAAAC AGACTGCCTG TGATCTACCT GGTTGACAGT
GCAGGCGTCT ACCTGCCGAT GCAGGATGAA ATATTCCCGG ATAAAGAACA TTTTGGCCGC
ATCTTCCGCA ACAATGCCCG CATGAGCGCT ATGGGTATTA CCCAGATCGC TGCCGTTATG
GGTAGTTGTG TAGCGGGTGG CGCATACCTG CCGATTATGA GTGATGAAGT ACTCATGGTG
AATGGGAATG GTTCCATTTT CCTGGCCGGA CCTTACCTCG TAAAAGCAGC TATCGGTGAA
ACCGTGGATG CGGAAACATT AGGCGGAGCC GTTACCCATA CTGAGATCTC CGGTATCGCC
GATTATAAAT TTGACAGCGA TGAAGAATGC CTTGATCAGA TTAAAAAGAT CGTCAGCAAA
ATAGGAGATC CTGCAAGTGC CGGCTTTAAC CGGGCAGTGC CTGCGCTTCC GGAGAAAGAT
CCTGCTACCC TGTACAGCGT CATTCCGGAA GATAGTACCC GTCCTTATGA TATGCTGGAG
GTGATTCACC GCTTAGTAGA CCGTTCTGAG TTTGATCAAT ATAAAGAAGA CTATGGCAAG
ACAATTCTCT GCGGATATGC CCGCATTGAT GGCTGGGCGG TAGGGATTGT TGCCAATCAG
CGGAAGATGG TGAAAAGCAA AAAAGGAGAG ATGCAGATGG GCGGTGTTAT TTACAACGAC
AGCGCAGACA AGGCAGCCCG TTTTATCATG AACTGTAACC AGAAAAAAAT TCCGCTGGTA
TTCCTTCAGG ACGTCACTGG TTTTATGGTT GGCAGTCGCA GTGAACATGC CGGCATCATC
AAGGATGGCG CTAAACTGGT GAATGCCGTA GCCAATTCGG TAGTGCCTAA ATTCACTGTT
ATCGTAGGTA ACTCTTATGG TGCAGGCAAC TATGCCATGT GCGGTAAAGC ATATGATCCG
CGTTTTATCT ATGCATGGCC TAATGCCAAG ATCGCAGTGA TGGGTGGAGA ACAGGCAGCT
AAAACATTGC TTCAGATACA GGTGGCTTCG CTGAAAGCAA AAGGAGAGGA GATCTCTCCG
GAAGAAGAAA GCCGTTTGCT GAATGAAATC ACTGAACGCT ATAACAGTCA GACGACACCG
TATTATGCTG CTGCGCGTTT ATGGGTAGAT GAGATCATAG ATCCGCAGGA TACACGTAAA
ATACTGTCTG AAAGCATTGC GGCTGCGAAT AATGCGCCCG TAGAAGATAG CTTTAGCCTC
GGTGTATTCC AGGTGTAA
|
|---|
| Protein sequence | MDAQQLDMNR NEDAMRKSLS TLRQRLSVIE QGGGKKNLEK VRQRGKLTPR ERIAYLLDKD
TPFTEIGAFA AYDMYAEHGG CPAAGTVGGI GYISGRQCMI VANDMTVKAG AWFPLTGKKN
LRLQEIAMEN RLPVIYLVDS AGVYLPMQDE IFPDKEHFGR IFRNNARMSA MGITQIAAVM
GSCVAGGAYL PIMSDEVLMV NGNGSIFLAG PYLVKAAIGE TVDAETLGGA VTHTEISGIA
DYKFDSDEEC LDQIKKIVSK IGDPASAGFN RAVPALPEKD PATLYSVIPE DSTRPYDMLE
VIHRLVDRSE FDQYKEDYGK TILCGYARID GWAVGIVANQ RKMVKSKKGE MQMGGVIYND
SADKAARFIM NCNQKKIPLV FLQDVTGFMV GSRSEHAGII KDGAKLVNAV ANSVVPKFTV
IVGNSYGAGN YAMCGKAYDP RFIYAWPNAK IAVMGGEQAA KTLLQIQVAS LKAKGEEISP
EEESRLLNEI TERYNSQTTP YYAAARLWVD EIIDPQDTRK ILSESIAAAN NAPVEDSFSL
GVFQV
|
|---|
| |