Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_3588 |
Symbol | |
ID | 8359755 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | + |
Start bp | 4470233 |
End bp | 4473193 |
Gene Length | 2961 bp |
Protein Length | 986 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 644965758 |
Product | TonB-dependent receptor plug |
Protein accession | YP_003123252 |
Protein GI | 256422599 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG4206] Outer membrane cobalamin receptor protein |
TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.00353353 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
| |
Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.00053116 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGAAAAAAA GGGGAATATT CCTGACAGCA TTGCTGTTGG CACTGTGGAG TTTTGCTATG GCACAGCAGG ACGTCACAGT AAAGGGACAC ATACAGGACA AGCAGGGCAA CTCTCTTCCC GGCGTTTCCA TCAAGATCAA AGGAACAGCT AAAGGCACGG CCAGCCAGCC AGATGGTAAC TTTACCATTC AGGCGCCTTC CAACGCCATA CTGGAACTGT CTTACGTGGG CTACGAAACA CAGGACTTTT CATTAGAGGG CCGTACCCAG GTCACCATTA CCCTGTCTGA CACCAAAACA GATCTGAGCG AAGTAGTGGT TATCGGTTAC GGTACCCAGA AAAAGAAAGA TGTTACTACA GCCGTAGTCG CTGTTAATAC CAAAGATATC GCTGAGCGTC CGATTACACA GACGGCTGCC GCCCTCCAGG GTAAAGCTGC CGGTGTGCAG GTAACGCAGC CTTCCGGTAA ACCGGGCTCC GCATTCTCAG TAAGAGTGCG TGGTGCGACT TCCGTACAGG CGGGTAACGA ACCTTTATAT GTGATCGATG GTGTGCCAAC CACCGATACA AGGGATCTGA ATACCAATGA TATCGCTACT ATTACCGTAC TGAAAGATGC TTCCAGCGCC GCTATCTATG GTGCAAGAGC ATCCAATGGC GTGGTACTGA TCACCACCAA GAGAGGTCGT TCCGGTGATG CGGTGATCAA CTTCAATACT TATTATGGTG TATCTAAGAT CGGTAAGAAG ATCGACGTAC TGGATCCTAC ACAATATAAT GACCTGATGA AGGAAATGGG TTTCAACGTA GTAACGCCTA CGGTGACTAC CAACTGGCTG GATGAAGTAT TCCAGACGGG TCGTAACCAG AACTATCAGT TATCAGCTTC CGGTGGTAGT GAGAAATCTC AGTATTTCAT CTCCGGCGCT TATACCAAAG ATGACGGTAT GGTTAAACCT GCGGAATATA ACCGCCGCGT TTTCCGTGCT AACCTGGACA ATCAGCTGAA ACCATGGATG AAACTGACCA CTAACATCAG CTACTCCAAT GTGGATCTGA AAGATGTAAA GGATAATGCA AACGCAGGTC GTAACGCAGC GATCCTGGGA GCACTGAATG CGCCTCCGAT CATCGGTATC TATGAGACAG ATGCAGACGG TCACCAGCGC TATACCATGA ACCCATATAA ATCCGGTTGG GATAACCCGC TGGCGGCTAT TGAAGGTCCG ACGCAAGGTA CAAAAGACAA CCGTATACTG GGTAATGCCG CGCTGGACAT CAATTTCACC AAAGATCTGA AGTTCCGGAC CAACTATGGT ATCGACTATA CCAATCACCA ATACGACTAT TACCTGGATT ATATCATGAC CACTCCGGGC CGTCTGGACC ATGGTTATGC TACCTCCCAG CGTTATAATA CAACGACCTG GCTTTGGGAA AATACCCTGA ACTATGACAA AAGCTGGAAG AAACACAATC TCTCCGCTTT GGGAGGTGTG ACTTCTCAGA AGAACAATTA CGCTGAAACT AATCAGACAG GTCGTGATTT CCCTGCTGAT CCGACTGTAA AAACGCTGAA CGCCGCTAAC CAGATCACAG GCGATACCAG AGAATCCCAG TGGTTCCTGA TGTCTTACCT GGCGCGTGTG ATGTATAACT ATGACAGCAG GTATCTGTTG ACGGTTAACT TCCGTGCGGA TGGTTCTTCC AAACTGGATA AAAAACATAA ATGGGGTTAC TTCCCGTCTG TATCTGCCGG CTGGCGTATT TCTTCCGAGC CGTTTATGCA GGACGTGAAA GCGATTAATG ACCTGAAATT AAGAGCGGGC TGGGGACAGA ACGGTAACGT AGAAGGGCTG AGTCCATATG CGTCCCTGGG TCTGAATAAT TTCGTTCGTC AGACGCCGAC AAGTCCGCTG TCAGGTCCTG GTATCACCCT GCCTGCAGGT GCGCCGAACC CGGATCTGAA ATGGGAAACC ACTACACAGA CCAACGTTGG TATCGACCTG AGTCTCTTTG AATCCCGTCT GACTTTCTCT GCTGATGCGT ACATCAAAAA GACAAAAGAT CTGCTGTTAA ATGTACCATT CCCACGTTCA GCGGAATACC AGTATATGCC GCGTAACTCC GGTGCACTGG AGAACAAAGG TCTGGAGTTC CTGGTTTCTT CTGTGAACGT TGATAAGGTT GACGGACTGC GTTGGAGCAC TGATTTCAAT ATCGCTTTCA ACCGTAACCG TCTGACTGAT CTGCAACTGA CACAGGTATA TAACTATGCT GCGCCAGAGA ACAGAGATTT TATCATCACA CTGAGAAAAG GACTGCCACT GGGTACTTTC TACGGATATG TAGCAGAAGG GGTTGATCCT AAGACAGGAG ACATGGTGTA TAAAGATGTA AATGGTGATG GTAATGTAAC GCCTACCGAC CGTACTGTGA TCGGTAATGC ACAGCCTACT TTCACTTATG GTCTGAACAA TAACCTGTCT TATAAAAGCT GGTCATTCTC ATTCCTGTTC CAGGGTTCTC AGGGTAATGA AGTGTTCAAC GCCTCCCGTA TGGAAACAGA AGGTATGTAC GACAGCAAGA ACCAGTCTAC CGAAGTACTG CGCCGCTGGA CAGCAGCTGG TCAGGTAACT GACATCCCAC GTGCTACCAA CGGTGATGTC ACCAACTCCC GTACTTCTTC CCGTTTCGTA GAAAATGGTT CCTTCCTGCG TATGAAGAGT GCAACACTCT CTTACAATCT GCCGAGGAGT GCATTGTCTG CTATGCACAT CAGCCGACTG ATGGTATATG CTACTGCACA GAACCTGTTT ACTATTACCA AATACCAAGG TTTTGATCCG GAAGTGAATG CTTACTCAGG TGATCCTGCG AATGGTGTAA CACTGGGTAT TGACTACGGT ACTTATCCGG TAGCAAGAAC TTATGTCCTT GGTTTAAACC TGTCCTTCTA A
|
Protein sequence | MKKRGIFLTA LLLALWSFAM AQQDVTVKGH IQDKQGNSLP GVSIKIKGTA KGTASQPDGN FTIQAPSNAI LELSYVGYET QDFSLEGRTQ VTITLSDTKT DLSEVVVIGY GTQKKKDVTT AVVAVNTKDI AERPITQTAA ALQGKAAGVQ VTQPSGKPGS AFSVRVRGAT SVQAGNEPLY VIDGVPTTDT RDLNTNDIAT ITVLKDASSA AIYGARASNG VVLITTKRGR SGDAVINFNT YYGVSKIGKK IDVLDPTQYN DLMKEMGFNV VTPTVTTNWL DEVFQTGRNQ NYQLSASGGS EKSQYFISGA YTKDDGMVKP AEYNRRVFRA NLDNQLKPWM KLTTNISYSN VDLKDVKDNA NAGRNAAILG ALNAPPIIGI YETDADGHQR YTMNPYKSGW DNPLAAIEGP TQGTKDNRIL GNAALDINFT KDLKFRTNYG IDYTNHQYDY YLDYIMTTPG RLDHGYATSQ RYNTTTWLWE NTLNYDKSWK KHNLSALGGV TSQKNNYAET NQTGRDFPAD PTVKTLNAAN QITGDTRESQ WFLMSYLARV MYNYDSRYLL TVNFRADGSS KLDKKHKWGY FPSVSAGWRI SSEPFMQDVK AINDLKLRAG WGQNGNVEGL SPYASLGLNN FVRQTPTSPL SGPGITLPAG APNPDLKWET TTQTNVGIDL SLFESRLTFS ADAYIKKTKD LLLNVPFPRS AEYQYMPRNS GALENKGLEF LVSSVNVDKV DGLRWSTDFN IAFNRNRLTD LQLTQVYNYA APENRDFIIT LRKGLPLGTF YGYVAEGVDP KTGDMVYKDV NGDGNVTPTD RTVIGNAQPT FTYGLNNNLS YKSWSFSFLF QGSQGNEVFN ASRMETEGMY DSKNQSTEVL RRWTAAGQVT DIPRATNGDV TNSRTSSRFV ENGSFLRMKS ATLSYNLPRS ALSAMHISRL MVYATAQNLF TITKYQGFDP EVNAYSGDPA NGVTLGIDYG TYPVARTYVL GLNLSF
|
| |