| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_3250 |
|---|
| Symbol | |
|---|
| ID | 8359416 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 4002217 |
|---|
| End bp | 4004277 |
|---|
| Gene Length | 2061 bp |
|---|
| Protein Length | 686 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 644965423 |
|---|
| Product | DNA/RNA non-specific endonuclease |
|---|
| Protein accession | YP_003122918 |
|---|
| Protein GI | 256422265 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG1864] DNA/RNA endonuclease G, NUC1 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGTCC CCCAAAAACT ACGTACTGCA ATCGCCCGGA TGGAAGCTGC AGATGGCGCA
TTAGCAGATG AAATCAGCAA GATTAGAAGT AATCCCTCTT ACAAGGAAGA AGCACGTGAG
ATCGCACCAC GTATTACGAC CGAAGTACCT GAAGGTTTAC AGGAAGGGTT TAACACCGAC
TTTGCGCTGG AGACCATCGT GCTGCGCGTA GGCCGGCCGG TATTACGCAT CAATGACAAC
CTTCCCAGTC TGGAATTCGA AGATGTAGAA AGCCAGATCT GGAAGAGTAA ACTGGAGCAG
GCGCGTAATA CCCTGCTGCA GACGATACCT TCTGTAGGCC GTATAGAGGT TAAACACCAC
CCCTCTTTCG AATGGCTTGG TACGGGTTGG ATGGTAGCGC CAGATATTGT CGTAACGAAC
AGACACGTTG CACAGGAATT TGGCAGAAGA AACGGTGACG GTTTCGTGTT CCGGCAGTTG
CTCGATAAAC CGGTCAGTTC TTCTATCGAT TTTTTACGGG AACAGGACCT GTCACCCGAT
CGTTCTTTTC AGGTATTGAA GATCCTGCAT ATAGAAGACG ATCGCGGACC AGACATTGCT
TTCCTGAAAG TAGCATCGTC AGGCGGCGCC ACACTCCCAC AGGCATTACC GCTTTTCACC
GGTACTGCTG TCAGTAACAC GGATATAGCA GTAATAGGCT ATCCGGCAAG GGACAGTCGC
ATCCCTGATG TGGCATTGAT GGAAGATATC TTTGGTAAGA TCTATAACTT TAAAAGACTG
GCGCCAGGTA AGATAACAGC GGTTACACCT GAGCGGATCT TTCATGATTG TACTACCCTT
GGTGGTTGTT CCGGAGGCAT CGTATTTGAT CTTTCCAACG GACAAGCGCT GGGATTACAT
TTCGCAGGTC GCTTCCTGGA ATCCAATTAT GCCGTACCTG CTGCTATTGT AGCAGAGCGG
TTAGCAACAA TACAACGATC TGGCCCTGTT TCTGCGGCTA TCGTATCCGA GGATAAGCCA
CCGGCATTAC AACAATTACA GGCATCTCCA TCCACTCAAA CAAACAATGT AAACGTGCAG
ACACAGACAT TCTCTTTTAA CGTTCCCATA GAAGTGACGG TTACTGTCGG TCAGCCTGTC
ATTGCAGGAG CAACAGCTGC AGCGCAAAAC ATACAGGCTA CACAACCGGC AAACGTCGAA
AGTGAAGACG AATACTATAC GGAAGGTGTT GCAGAAGATT ATGATGACCG TACAGGCTAC
AATCCTGCAT TTCTGGGTAA TGAGTTCATG GTACCACTGC CAGAGATTGC AGATCCTGCG
AAAGCCGCAG ATGTACTCCG GTATGACAGA AATGGTGAGC AGGACCATGT ACTGCGTTAT
GAGCATTTCT CTGTTGTAAT GAGTAAAAAA AGACGTCTTT GTTATTTCAG CGCTGTCAAT
ATCAATGGCG CTAAATCAAG AAAAGCGACC AGAGTAGGCT GGCGTACCGA TCCGCGTATA
GCAAAAGATG CCCAGATCTT AAAAGAGTGT TATGGTAATC CGCCTAAATT CAGCCGTGGA
CATATGACCC GCCGGGAAGA CCCGGTATGG GGCAGTGAAA CAGCTGCATT ACGTGGAAAT
GCGGATTCTA TGTGTGTGAC TAACACCATT CCGCAGATGC AGTCTTTTAA TGCGCCGGTA
TGGCTCGGAC TGGAAGATTA TGCATTGGAC CATGCACGTG AAGACGGCAT GAAGATAACA
GTATTTACAG GGCCTGTTTT CAGAAAGAAT GATCCGGTGA TCTATGGCAT CAAGATACCG
GTGATCAGCT GGAAAATTAT AGTCTTTATA AATGATGAAA CAGGAAAATT GTCGGCTACT
GCTTATAAGA TGTCGCAAAA GGATCATTTG CCGGAAGAAG AATTTGTCTT TGGCGAATAT
GAAGCTGCGC AGACTTCTAT CGCGAACATT GAAAAGCTGA CAGGATTATC TTTCGGAGAC
TTATCCGCAC ATGATCCATT AAATGAGCAA AACGAGTTAC AAGCTTTCGC ACTGGAGCAT
GTCAAACAAA TCCGGTTTTA A
|
|---|
| Protein sequence | MAVPQKLRTA IARMEAADGA LADEISKIRS NPSYKEEARE IAPRITTEVP EGLQEGFNTD
FALETIVLRV GRPVLRINDN LPSLEFEDVE SQIWKSKLEQ ARNTLLQTIP SVGRIEVKHH
PSFEWLGTGW MVAPDIVVTN RHVAQEFGRR NGDGFVFRQL LDKPVSSSID FLREQDLSPD
RSFQVLKILH IEDDRGPDIA FLKVASSGGA TLPQALPLFT GTAVSNTDIA VIGYPARDSR
IPDVALMEDI FGKIYNFKRL APGKITAVTP ERIFHDCTTL GGCSGGIVFD LSNGQALGLH
FAGRFLESNY AVPAAIVAER LATIQRSGPV SAAIVSEDKP PALQQLQASP STQTNNVNVQ
TQTFSFNVPI EVTVTVGQPV IAGATAAAQN IQATQPANVE SEDEYYTEGV AEDYDDRTGY
NPAFLGNEFM VPLPEIADPA KAADVLRYDR NGEQDHVLRY EHFSVVMSKK RRLCYFSAVN
INGAKSRKAT RVGWRTDPRI AKDAQILKEC YGNPPKFSRG HMTRREDPVW GSETAALRGN
ADSMCVTNTI PQMQSFNAPV WLGLEDYALD HAREDGMKIT VFTGPVFRKN DPVIYGIKIP
VISWKIIVFI NDETGKLSAT AYKMSQKDHL PEEEFVFGEY EAAQTSIANI EKLTGLSFGD
LSAHDPLNEQ NELQAFALEH VKQIRF
|
|---|
| |