Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_3019 |
Symbol | |
ID | 8359183 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | - |
Start bp | 3739258 |
End bp | 3740394 |
Gene Length | 1137 bp |
Protein Length | 378 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 644965199 |
Product | efflux transporter, RND family, MFP subunit |
Protein accession | YP_003122696 |
Protein GI | 256422043 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0845] Membrane-fusion protein |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.809394 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 48 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATAGAA ATCTGATATA TGGCATGTTA GCTAATGCTA TCATGCTTTC GGGCTGCTCA TCAGGCGGTA CACAATCGCC AACCGCAACA ACACCAACAG TACCGGTGGC CACCGTTAAT GCAGGTGACG CCGTTGTCTA TACGGAATAT CCGGCGAAGA TTGAAGGTCA GAACGACATT GAGATCAGAA CACAAGTTGC GGGAATACTG GAAAAAATCT ACGTTTCCGA AGGGGCATAT GTAGAAAAAG GCGCTCCCTT GTTTCAAATT GACGCGCGAC CATATCGCGA AGCATACAAC AATGCCGAGG GAGAATTACT CGCTGTCAAA GCAGGCGTAG TCACTGCAAA ACTAGAGGTT GATAAGCTAA CACCACTGGT TCAAAGCAAG GTGGTATCTG CTTACCAGTT AAAAACCGCA CAGGCTGCCT ATGAAGCTGC CCTGGCGAGA GAAAAACAAG CAGCAGCCAA AGTCGGAAAT GCGAAGATTA CCTTGGGTTT CGCGACCATC ACGGCACCGG TAAGTGGATA TATCGGCAGA CTTTTCAAGA AAACAGGAAG TCTCCTTGCG CCTTCGGACA CTCAGCCCTT ATCCTATCTT TCTGATAACC GGGAAGTACA TGCCTATTTT TCTATTGGAG AAGCTGATTT TGTCACGTTC AAAAATGAGT TAAAGGGCGC TTCAATTGAC GAAAAATTAA AGCATGCGGC GGCTGTAAAT ATGTTGCTTT CCGGAGGAAC AGCGTATTCG CAAACGGGCG TATTGGATAT GGTTGACGCG GCTTTTGATA AAAATACCGG AGCAATCACT TTGCGCGCGA CATTCCCCAA TAAAGGAGGT TTACTTCGTT CCGGTAATTC AGCCCGGATA AAATTGGCAC TTAAACAATC CGGAGTGATC CGCATCCCCC AATCTGCCAC TTTCGAAATG CAGGATAAAA CATTTGCGTT TATCGTTGAC CAAAATAGTA AAGCACGACA GGCGGCACTG ACCATATCCG GATCAACGGG AAATACCTAT TATATCTGCG GTGGATTAAA GGATGGCGAC CGGCTTGTTC TAAAGGGGTT GGAGTCTCTT AAAGATGGTA CAGTCGTAAA ACCTGAAAGA TCGAACGAAA AATTGGCCAG CAATTAA
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Protein sequence | MNRNLIYGML ANAIMLSGCS SGGTQSPTAT TPTVPVATVN AGDAVVYTEY PAKIEGQNDI EIRTQVAGIL EKIYVSEGAY VEKGAPLFQI DARPYREAYN NAEGELLAVK AGVVTAKLEV DKLTPLVQSK VVSAYQLKTA QAAYEAALAR EKQAAAKVGN AKITLGFATI TAPVSGYIGR LFKKTGSLLA PSDTQPLSYL SDNREVHAYF SIGEADFVTF KNELKGASID EKLKHAAAVN MLLSGGTAYS QTGVLDMVDA AFDKNTGAIT LRATFPNKGG LLRSGNSARI KLALKQSGVI RIPQSATFEM QDKTFAFIVD QNSKARQAAL TISGSTGNTY YICGGLKDGD RLVLKGLESL KDGTVVKPER SNEKLASN
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