| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_2727 |
|---|
| Symbol | |
|---|
| ID | 8358888 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 3335872 |
|---|
| End bp | 3337014 |
|---|
| Gene Length | 1143 bp |
|---|
| Protein Length | 380 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 644964907 |
|---|
| Product | efflux transporter, RND family, MFP subunit |
|---|
| Protein accession | YP_003122407 |
|---|
| Protein GI | 256421754 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 46 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCACAGAT ATCTCTTTTT ATATGTCCTT TTCCTGGCCG CGTGTAGCAG TCATGAAGCC
TCCAAAGCAC CCGCAGCGAC AGAGGCTGCA CCAGCAACGG CTGACAGCAA TGCTGTTAGT
CTGACGCCGG AACAGATCAA AAACGCCGGT ATTGAAACCG GTACTCCTTC CACGGCAGCG
GTCAACGGTA CCCTGCGTTT ACAGGGCACG ATCGACGTAC CGCCACAGAG TACGGTCAGT
GTCAGCTTTC CGCTGGGAGG TTATCTGAAA AAAACAGACC TGTTGCCGGG CACACATGTC
CGCAAGGGAC AGGTACTGGG CGTACTGGAA GATATGCAGT TCATCCAGTT ACAGCAGGAT
TATCTGCTGG CCAAGGAGAA ATTCAGCTTT GCGGAGACCG AATACAAGCG CCAGCAGGAA
CTGAATGCCA GCAAAGCCAG TAGTGATAAA GTATTCCAAC TGGCGAAAGC GGAGATGGAA
AGTCAGCGTA TTGCCATGCA GGCGCTGGGA CGTAAACTGG AGCTGATCGG GATAGATCCT
ACCCATTTAC ATGCGGGGAA TATCTCTAAA AGTGTGAATA TCTACTGTCC TATCAATGGA
TTTGTGGCGA AAGTGAATGT GAATATCGGC AAATACACTT CTCCGACCGA TGTATTGTTT
GAGCTGGTGG ATCCCAGCGA TATCCATTTA TCCCTCACAG TATTCGAAAA GGACGTCAAT
CAGCTCTCTA TTGGTCAGAA GGTAATTGCT TATACCAATG AGCACCCCGA CAAGAAATAT
GAGGCAGAAA TCCTGCTTAT CAGCAAAAAC CTGGATGCAG AGCATATGGC GACCATTCAC
TGTCATTTTA AACAGTTTGA CGCTTCTTTA TTGCCCGGTA TGTTCATGAA TGCGGAAGTG
GTAGTCAACA ATGTGACGGC CCTGACGGTG AATGAAGCGG CGATTGTCCG CTGGGAGAAT
AAATTCTATG TCTTTGAGGA TAAGGGCAAT AACCTGTTTA AAATGGTTCC TGTGACGCCG
GGTAATGTGT ATGAGGGACA GGAGCAGTTT TCAGCGCCAG GTATTACGGA GACAACCAGA
CTTGTTACTA AAAATGCATA TGCACTGTTG ATGAAAATGA AAAACAGTGC GGAAGAAGAA
TAG
|
|---|
| Protein sequence | MHRYLFLYVL FLAACSSHEA SKAPAATEAA PATADSNAVS LTPEQIKNAG IETGTPSTAA
VNGTLRLQGT IDVPPQSTVS VSFPLGGYLK KTDLLPGTHV RKGQVLGVLE DMQFIQLQQD
YLLAKEKFSF AETEYKRQQE LNASKASSDK VFQLAKAEME SQRIAMQALG RKLELIGIDP
THLHAGNISK SVNIYCPING FVAKVNVNIG KYTSPTDVLF ELVDPSDIHL SLTVFEKDVN
QLSIGQKVIA YTNEHPDKKY EAEILLISKN LDAEHMATIH CHFKQFDASL LPGMFMNAEV
VVNNVTALTV NEAAIVRWEN KFYVFEDKGN NLFKMVPVTP GNVYEGQEQF SAPGITETTR
LVTKNAYALL MKMKNSAEEE
|
|---|
| |