Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_2597 |
Symbol | |
ID | 8358757 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | + |
Start bp | 3183684 |
End bp | 3184445 |
Gene Length | 762 bp |
Protein Length | 253 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 644964780 |
Product | transcriptional regulator, AraC family |
Protein accession | YP_003122281 |
Protein GI | 256421628 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.00366269 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 0.225275 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTCTGTA AAGAATATCT GCAGCCTGAT GATCAGCTGC AGGACCATAT ACGTGCTTAT ATTGTCCTGC AGGCTGATTT TCCGGATCTT ATCAGCCGCG ATTACACTTT ATTACCCCAG GTACATCCTT TACTGTTTTT TAATCTTGGG GAAACGCCTG CTGTACAGAA CAGACACACC GGCGAATACC TGCGACAATA CCTGCTCATT CCCGCACATC ATCAATCACT CGCTTTCAGT ATAGATCCGG CCATGAAAAT ACTGGCTGTA CAAGGTGTAG CCGGCAGTGA AAGTCACCTG TTCCAGGATA TTTTGCAACT GGATCATATC CAGCAGCAGC TATTGCAATG TAAGGACGCA CAAAGCATGT GTACCCTGCT GGATACTTTA TTAGGGCAGC ATTTGCAGCA GGAAAAACAA TATACCAGGA GTATACGCGA TGCAGTGCGC ATTATTCTGG ATACTGGTGG TAATGTGATC ATCCGTCAAT TGGAACGCGC CACCTTTCAG ACAAAACGAA CACTGGAAAG AGGGTTTCTT CTACAGACAG GGCTGCATCT TAAAATGTTT TGTCGCATCA CCCGTTTCAG AAAAGCGATC GCGCACATAG AAAAAGAAAA ACAATTGTGC TGGGCAAAAC TGGCGCAGGA CTGTGGTTAT TACGATCAGA CGCACTTCAT CAATGAGTTC CATTATTTTG CGGGTTGTTT GCCAGGAGCC TATACCGGTA CCCCTTCACT CTTCGAACAG GCGATCGCTT AA
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Protein sequence | MFCKEYLQPD DQLQDHIRAY IVLQADFPDL ISRDYTLLPQ VHPLLFFNLG ETPAVQNRHT GEYLRQYLLI PAHHQSLAFS IDPAMKILAV QGVAGSESHL FQDILQLDHI QQQLLQCKDA QSMCTLLDTL LGQHLQQEKQ YTRSIRDAVR IILDTGGNVI IRQLERATFQ TKRTLERGFL LQTGLHLKMF CRITRFRKAI AHIEKEKQLC WAKLAQDCGY YDQTHFINEF HYFAGCLPGA YTGTPSLFEQ AIA
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