| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_2327 |
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| Symbol | |
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| ID | 8358482 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | - |
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| Start bp | 2866903 |
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| End bp | 2869974 |
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| Gene Length | 3072 bp |
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| Protein Length | 1023 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 644964513 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_003122019 |
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| Protein GI | 256421366 |
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| COG category | [S] Function unknown |
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| COG ID | [COG1729] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03302] outer membrane assembly lipoprotein YfiO |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.930727 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 0.708749 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAATTCA TAAGAAAGTT TCTTGTTTCC GGACATTGGT ACTTATTCCT GGCCTCTTTC
TGTATACTGG CTGCACCTGC GGCGAAAGCA CAGCAAACGC GCGTATATAC AGAGCCGGAT
AAAGTTTTCA AGGACGCCCA GCAACTTTTC CAGCAGGAAA AATACGCCGT GGCCATGCAA
TTGTTCCGTC AAACGATCGA TAACATCGGC TATTTTCAGG AGACAAGCCG CAGTCTCGTA
AAGACAGACG CTCAGTATTA TTATACCGTC TGTGCACTGA AACTCGGTCA GGCAAATGGC
GAAAAACTGG CGCTGGACTT CCTCGCCAAC TACAATAACA ACGCAAGGGA GCAACTGGTC
AGCTATCAGC TGGCGAAGTA TTACTTCCAT CAGAATAAGC TCAAAGAAGC CATTCCGCTG
TACGAAAAAG CCAATATCGA GAACCTTTCC AATGCCGAAA TCGCAGAAGC AAAGTTTGAA
CTGGCTTATT GCTATTTCAA TGTAAAAGAC TTCCAGAAAG CGCAACCACT GTTCGGTTCC
ATCAAGGAAG TACAAGGCAA ATACTACATG TCGGCTAACT ATTACTACGG TTTCATCGCG
TATTATAACC GTCAGTACAA TGAAGCCCTC ACCAGCTTCC AGCGGGTAGT AAATGAGCCT
AAATACAGCG CCATCGTTCC TTATTATATC GCTGAAATCT ATTACTTCCA GAATAAGAAA
GACCAGTTGA TCAGTTACGG CGAACCGCTT GTTAAGAAAG GCGGACTGTA TTACGAAGCT
GAACTGAAAC AGTTACTGGG CCAGACCTAT TTCGAAAGAA AAGAATACCA GAAGGCACTG
CCTTACCTGC AGGAATTCAA TGACAATGCA GACGAGGTCA GAAAAGAAGA TATTTACCAG
CTGTCTTACA GCTACTATCA GACCGGCAAC TTCAGCAAGG CAATCAACGG TTTCAAACAA
CTGAGCAGCG AAAAAGACTC TCTGGGACAA AACTCCATGT ACCTGCTGGG TGACTGTTAC
CTGCGTACCA ACCAGAAAGC CAATGCACGT AACGCATTCG CCTTCTGTGC ACGTAACAGT
GCCAATCCGC AGCAACAGGA AATTTCCCGC TTTAACTATG GTAAACTGTC CTACGAACTC
GGTTATCAGG ACGCTGCTGT ATCTGAACTG ACCAGCTTTG TCAATACCTA TCCGCGTTCG
GCTTACACCA AGGAAGCCCG CGAGATCCTG GTAAACCTCT TCGCCAATAC CAACAACTAT
AACGATGCAC TGACCATCAT CGAGGCAATG CCGGAGAAAT CTCCTGCTGT GCTGAAAGCC
TACCAGAAAG TAGCTTACGG TCGTGCAACG GAAGTAATCA ATGACCAGCA ACTCGCAGAA
GCGGACCGCC TGCTGGACAT CTCCCTGAAA AATCCTTACG ATAAAAATCT TGTGCAGCTG
GCGCATTTCT GGAAAGCGGA AATCTCCATG CGACAGAACA AAACACAGGA CGCGATCAGT
CACCTGAATA CTTATCTGAC CGGCGCTGTG CCTTCTTCCG GTGAAGCCAA TGCACAGACG
GCCAGCTATA ATATGGGTTA TGCGCTGTTG AAAGCAGAAG ATTATACCCG CGCTTTACAG
CACTTTGAAG CGGCACAACG CACTACCGGA CCAAATGCAG CACGCATCAC CACAGATGCA
GCTCTCCGTA GTGCCGACTG TTACTACATG CTGAAAGATT ATCCGAAAGC AATGGCGCTG
TATGAGAAGA TCATCGCCAA TAACCAGCCA GGTTCTGACT ATGCTACCTA TCAGAAGAGT
ATCATTCTGG GTATCCAGGG CAAGACCAAT GAAAAAGTGG CCCTGCTGAA ACAACTGGGT
AACAAATTCC CAAGCTCCGG TTTCGGTAAT GACGCAGATC TGGAGATCGC AAACACTTAT
CTGGCAGAAG AGAAATATAA CGAAGCAATT CCTTACCTGG AAAATGTATT GCAGAAACAG
CCTAATGGTC CGAATGCACC ACGTGCATTA CTCAAACTGG GTCTCTGCTA CTTCAATAAA
GACAATGACG ATAAGGCACT CTCCTACTAT CGTCAGGTAA TTGAGAAATA TCCAAACTCT
CCTGAAGCGA ATGCGGCACT GACTGCAGTA AAGGATATCT ATGTTAGTCA GGGTAAAACC
GATGCCTATA TCGCATTGCT GAAAGCATCC GGACAAACCA TCACCGCTTC TGCTGAAGAC
TCCCTGAGCT ATGCAGCAGC TGAATCGAAA TTCAGCAATG GCGATTGTGC CGGTGCAGTT
CCTGCCTTCA ACAGCTACCT GCAACGCTTT CCTAACGGCG CGTTTGTATT GCCTGCAAAC
TTCTACAAAT CAGAATGTGC GTATAACAAC AAAGATTACG CAGGTGCATT ACCTGGTTAT
GAGTTTGTAC TGACTAAAAA CAACAGTTTG TATGCAGAAC GTGCTGCATT ACAGGCCGCA
AATATCAACT TCTATCAGGT GAAGAATTAT GAGAAATCCC GCACTTACTA TCTGCAGCTG
CAGGACCTTT CTACCACCAA AGAAAACACC TTCGCCGCTA CCCGAGGTCT GTTGCGCAGC
AACTACCAGC TGAAACACTG GGATGAAGTG AACAGTTACG CAGAAATCCT GCTGTCCAGC
AGCAACATCA GTACAGATGA CCAGATCGTA GGTCATGCGT ACCTGGGTCG CGCAGAACAG
GAAGGTGGTA ACTACGATGA AGCGATCAAA GAATATAAGA TAGCAGCTGG CCTGACCAAA
TCAGAAATCG GTGCGGAAGC CCGCTATAAC ATTGCTTACT GTCTGTTACA GAAGAATGAT
CTGGCAGGCG CTGAAAAAGC AGGTTTTGAT GTAATAAAGA ATACGCCTGG TTATGAAATG
TGGGTTGCAA AATCCTACAT CCTGCTGGGT GATATATACC ATCGCCAGAA AGACTATTTC
AATGCAAAGG CAACCTTCCA GAGCATTGCA GAAAACTGTC AGATCGCTGA GCTGAAACAG
GAAGCGAAAG ACAAACTGGC GAAAGTAGAA GCAGACGAAA AAGCTGCCTC TAAAATTAAA
TCCAATAAAT AA
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| Protein sequence | MQFIRKFLVS GHWYLFLASF CILAAPAAKA QQTRVYTEPD KVFKDAQQLF QQEKYAVAMQ
LFRQTIDNIG YFQETSRSLV KTDAQYYYTV CALKLGQANG EKLALDFLAN YNNNAREQLV
SYQLAKYYFH QNKLKEAIPL YEKANIENLS NAEIAEAKFE LAYCYFNVKD FQKAQPLFGS
IKEVQGKYYM SANYYYGFIA YYNRQYNEAL TSFQRVVNEP KYSAIVPYYI AEIYYFQNKK
DQLISYGEPL VKKGGLYYEA ELKQLLGQTY FERKEYQKAL PYLQEFNDNA DEVRKEDIYQ
LSYSYYQTGN FSKAINGFKQ LSSEKDSLGQ NSMYLLGDCY LRTNQKANAR NAFAFCARNS
ANPQQQEISR FNYGKLSYEL GYQDAAVSEL TSFVNTYPRS AYTKEAREIL VNLFANTNNY
NDALTIIEAM PEKSPAVLKA YQKVAYGRAT EVINDQQLAE ADRLLDISLK NPYDKNLVQL
AHFWKAEISM RQNKTQDAIS HLNTYLTGAV PSSGEANAQT ASYNMGYALL KAEDYTRALQ
HFEAAQRTTG PNAARITTDA ALRSADCYYM LKDYPKAMAL YEKIIANNQP GSDYATYQKS
IILGIQGKTN EKVALLKQLG NKFPSSGFGN DADLEIANTY LAEEKYNEAI PYLENVLQKQ
PNGPNAPRAL LKLGLCYFNK DNDDKALSYY RQVIEKYPNS PEANAALTAV KDIYVSQGKT
DAYIALLKAS GQTITASAED SLSYAAAESK FSNGDCAGAV PAFNSYLQRF PNGAFVLPAN
FYKSECAYNN KDYAGALPGY EFVLTKNNSL YAERAALQAA NINFYQVKNY EKSRTYYLQL
QDLSTTKENT FAATRGLLRS NYQLKHWDEV NSYAEILLSS SNISTDDQIV GHAYLGRAEQ
EGGNYDEAIK EYKIAAGLTK SEIGAEARYN IAYCLLQKND LAGAEKAGFD VIKNTPGYEM
WVAKSYILLG DIYHRQKDYF NAKATFQSIA ENCQIAELKQ EAKDKLAKVE ADEKAASKIK
SNK
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