| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_1897 |
|---|
| Symbol | |
|---|
| ID | 8358048 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 2315569 |
|---|
| End bp | 2318877 |
|---|
| Gene Length | 3309 bp |
|---|
| Protein Length | 1102 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 644964085 |
|---|
| Product | TonB-dependent receptor plug |
|---|
| Protein accession | YP_003121594 |
|---|
| Protein GI | 256420941 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG4206] Outer membrane cobalamin receptor protein |
|---|
| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.734415 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 48 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGAAGAT CTCTCTTAGT GTGTACATTG CTTTTCTTAT GCTGCTGCTT TACTGCTTTA
GCACAGACTA AGATAGCAGT GACGGGAACT ATCAAAGATG CCAAGGGTAC TCCTCTCCCT
GGCGTAACCG TTAAAGAAAA GGGCGTTTCT AATGGCGCCA TGTCAAACCC GGACGGGTCT
TTCAAGCTGT CGGTTCCAGC TGAAGGTACA TTAGTCGTTT CGTATGTAGG GTTTGTTACC
CAGGAAATTC CAGTTGCTGG AAAAACTAAC ATCGATGTTA CATTGCAGGA AGACAACAAA
AACCTGAATG AGGTAGTTGT TACTGCAATG GGTATTAAAA GAGAATCACG TGCACTGGGT
TATGCCGTAA GCACTGTGAG CTCTAAAGAT TTAACACAGA CTGCCAGCCC TAGCATCGGT
TCTGCACTGT ATGGTAAAGC TGCGGGTGTG AAAATCACGC AGGCGCCAGG TGGTGCTGCA
GGTGGTGTGT CTATTCAGGT AAGAGGTGTA TCTTCTGTAG GTCTGAACAC GCAGCCACTG
TATGTAATCG ACGGTGTGCC TTTGAGAAAC TTCAGCAATC CTGGATCCAA CTCTTTCGGT
ACCAGCAATG GTCGTATCGA AAGTAACGGT GCCAACGATA TTAACCCTGA AGATATCGAG
AGCCTGACTG TACTGAAAGG TGCGAGTGCT ACAGCGCTGT ACGGTTCAGA AGCAACGAAT
GGCGTGATCG TAATCACTAC TAAAAAAGGT GCAAAAGGCA AAAACGGCCT GGGTGTAGAA
GCTAACTACT CTTACAACCA GGAAAAACTG GCGATGTCTC CTGATTATCA GAACGAATAT
GGTCCTGGTT ACAACCCGGC CCTGAACCTG TCTGCTACCA ATGGACAGAG CCGCGATGGC
TGGTTCACTG AGACGGATGG CGCGCATCAC CCTTACTACA GAGCTTACGG TTCATTCGGT
GCTAAATTCG ATGGCCGTGA AGTTACTTAT TGGGATGGTA CAAAAAGAAA ATACGAAGCA
CAGCCTAACA ACTACAAGGA TTTCTACCAG ACTGGTTACA ATTCTCAGGC TAACGTTGCG
ATCTCTAACG CAAATGATAA AGGTAGCTTC CGTTTTTCTT ACACTCGTCT TGACTACAAG
AGCATCATGC CAGGTAGCAA CCTGTATAAG AATAACTTCA ACTTCAATGG TACCCTGAAG
CTGAGCGAAA GAGTATCATT AGATGTTGTG TCCAGCTATA ATAACTTCTT CAACCATAAC
CGTCCAAACG TACTGAGTAA CGTTACCAAC TCTTTTGGTG GTTTCTTCAG CCGTTTTGAT
GATATGAATG TCTATAAGAC ACGATTCCAG ACCAGAGACG GTTACAAATA CGTACTGTAT
AATAATACCA GCTATGGTCA GGAAGATAAA TTCCTGTATA ACATCAGAGC TAACCAGCTG
CTGGACTACT TCTGGGATAA CCTGCGTAAC AGCTACGATG AAACCCAGAA CCGTTTCATC
AACAGTGCTA CCCTGAGCAT TAAACTGCTG GATAACCTGA CTATCAGAGG TAGAGCGGGT
GGTGACTTCA CAAACCTGTA TGCTGCTGAT ATGAGACATA ACGAGAAACC AGCAAGACTT
GGTTATAGCG GTATGTATGC TACAGAAAAT AGAAATAACA ATGTATTCTA CGGTGACGTA
CTGGCTGTAT ACAATCCTAA ACTGACGAAG GATCTGGATA TGACCGTTAC CGGTGGTTAT
ACTGCACGTA AAACTACTTA CAAATACAAT AAGATCTCTT CCAACGGTGG TCTGGTATCT
GAAAACTGGT TTAGCATCGG TAACTCTGCA CAACAGGCAA CTGTAGTGTC TGAGCGTGCA
ACTCAATACG ATGTTGCTGG TTTCGGTATC ATAAACTTTG CTTATAAAGG CTTCCTGTAT
ATTGAAGGTA CCGGCCGTTA TGAGTCAACC AATACACTGC CTGTAGCAGT AAACTCTTAC
TTCTATCCGT CTTTCAACGC AGGTTTCATC CTGTCTGACG TAGTGAAAAT GCCTAAAGCA
ATCAGCTACG CTAAGATCAG AGGTTCTTAC GGTTTTGTAG GTAACCACCC GAACCTGTAT
CAGTCTAACG TACTGTACAC ACAGTATGGT GTGGCTTATG GCAACAACAA CCTGCTGTAT
CAGCAGCCTA ACAGTAAAGC CTTCGGTAAC GCAAATCTGA AGTCTGAGAA AAAGAGAGAA
TCTGAGATCG GTCTGGAAAC AAGACTGCTT GACAACAAAA TCAGCGTTGA CCTGAGTTAC
TATAACAACA AGGTGAATGA TCAGATCCTC TTCAGATCTA TCGCTACTAC TACCGGTGCT
GCAAGCCAGC TGGTAAACGC AGGAGATATC TCCAACTACG GTTTTGAAGC TGCGATCAGC
GCAACTCCGA TCGATAAGAA AGACTTCCGT TGGAATACCC GTTTCAACTT CGCTGTTAAC
AGAAACAAAC TCACAAGACT GCCTGACGGT CAGACTTTCC TGGACGCAAC AAACCTGGAT
AACCAATATG TTGTAATTCG TTCTCAGGTA GGTGAGTCTC TGGGTAATAT CTATATCCAC
CCACGTGAAA CAGACGGAAA AGGTAACATG ATCGTTGACG AAAATGGTGT GTATACGCTG
AACAAAACTG ACTATGTTAA AGCTGGTAAC ATTCTGCCTA AATTAGTAGG TGGTTTCTCC
AATACACTTT CGTATAAAAA CTTCGCACTG GACTTCACAC TTGACTACCG CTTTGGTGGT
AACCTGATCT CAACGCCAAC CTACTATATG TACGGTGCTG GTATGCTGAA ATCAAGTCTG
CAATACAGAG ACGCAGCACG TGGTGGTCTG TCTTACCATG TTGAAGGTAA CGAGCAGTCT
CAGGATACTA AACAGTATAC TTACGTACTG GATGCAAATG GTCCTTATCA TGATGGTGTG
ATCCTGCCAG GTGTTAAAGC TGATGGTTCT AAGAATGACA GAGTGATCTC TGCTGCTGAC
CATTACTTCA ATAACTACCA GTGGGGTGAA ACCGGCGATT ATAGCGCTGC AATCTTCAAA
AACAATTACA TTAAACTGCG TGAGGTAGCT GTAACTTACA ACATCCCGAA AGCGTTTAGT
GATAAACTGC ACTTCCAGGG TCTTCAGGTG TCTCTGATCG GACGTAACCT GCTGTATGTT
TACAAATCCC TGCCTAAAGG ACTGGATCCT GAAGTTGGTG TAGGTTCTAT GTGGTGGCAG
CAAGGTATTG ACAATGGTAC CGCTGGTCCT ACAAGAAGTT ATGGAGCAAG CATCCGTGCT
CGTTTCTAA
|
|---|
| Protein sequence | MRRSLLVCTL LFLCCCFTAL AQTKIAVTGT IKDAKGTPLP GVTVKEKGVS NGAMSNPDGS
FKLSVPAEGT LVVSYVGFVT QEIPVAGKTN IDVTLQEDNK NLNEVVVTAM GIKRESRALG
YAVSTVSSKD LTQTASPSIG SALYGKAAGV KITQAPGGAA GGVSIQVRGV SSVGLNTQPL
YVIDGVPLRN FSNPGSNSFG TSNGRIESNG ANDINPEDIE SLTVLKGASA TALYGSEATN
GVIVITTKKG AKGKNGLGVE ANYSYNQEKL AMSPDYQNEY GPGYNPALNL SATNGQSRDG
WFTETDGAHH PYYRAYGSFG AKFDGREVTY WDGTKRKYEA QPNNYKDFYQ TGYNSQANVA
ISNANDKGSF RFSYTRLDYK SIMPGSNLYK NNFNFNGTLK LSERVSLDVV SSYNNFFNHN
RPNVLSNVTN SFGGFFSRFD DMNVYKTRFQ TRDGYKYVLY NNTSYGQEDK FLYNIRANQL
LDYFWDNLRN SYDETQNRFI NSATLSIKLL DNLTIRGRAG GDFTNLYAAD MRHNEKPARL
GYSGMYATEN RNNNVFYGDV LAVYNPKLTK DLDMTVTGGY TARKTTYKYN KISSNGGLVS
ENWFSIGNSA QQATVVSERA TQYDVAGFGI INFAYKGFLY IEGTGRYEST NTLPVAVNSY
FYPSFNAGFI LSDVVKMPKA ISYAKIRGSY GFVGNHPNLY QSNVLYTQYG VAYGNNNLLY
QQPNSKAFGN ANLKSEKKRE SEIGLETRLL DNKISVDLSY YNNKVNDQIL FRSIATTTGA
ASQLVNAGDI SNYGFEAAIS ATPIDKKDFR WNTRFNFAVN RNKLTRLPDG QTFLDATNLD
NQYVVIRSQV GESLGNIYIH PRETDGKGNM IVDENGVYTL NKTDYVKAGN ILPKLVGGFS
NTLSYKNFAL DFTLDYRFGG NLISTPTYYM YGAGMLKSSL QYRDAARGGL SYHVEGNEQS
QDTKQYTYVL DANGPYHDGV ILPGVKADGS KNDRVISAAD HYFNNYQWGE TGDYSAAIFK
NNYIKLREVA VTYNIPKAFS DKLHFQGLQV SLIGRNLLYV YKSLPKGLDP EVGVGSMWWQ
QGIDNGTAGP TRSYGASIRA RF
|
|---|
| |