| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_1428 |
|---|
| Symbol | |
|---|
| ID | 8357569 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 1739520 |
|---|
| End bp | 1740113 |
|---|
| Gene Length | 594 bp |
|---|
| Protein Length | 197 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 644963608 |
|---|
| Product | Biopolymer transport protein ExbD/TolR |
|---|
| Protein accession | YP_003121126 |
|---|
| Protein GI | 256420473 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.770563 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGAAA TGGATACCAG CAGTAGTGGT GGGAAAGGTA AACACCAGGG TACGAAATCC
AAGAAGCAGT CTACACGCGT AGACATGACT CCAATGGTGG ATCTCGGCTT TCTGCTAATC
ACTTTCTTCA TGTTGACTAC GACTATGAGC AAGCCCAAAA CAATGGACTT GATCATGCCG
AAAGATACTA AGGATGAGAA AGAGCAGAAC AAGGTAAAAG AAAGTACTGC ACTCACTATA
CTGCTTGGAA AAAAAGATCG CGTATACTAC TACGAAGGTC TGGCACAGGA TCCGAATGCT
TCGGCAAATC CTGAATTTTT CAAAGCAACT ACGTTTGCTA ATACTGGCGG CATCAGAGAT
GTAATTATCA AAAAGCGTGA TGAGGTTGCT CAATTAAGGA ACTCAAAGGG AGAGCCTGAA
GATGTAGTGA TTATCATTAA AGCTGATAAT GATGCTACAT ACAAGGACTT CGTTGACATT
CTGGACGAAA TGGCCATTAA CCGCATTCAA CGTTATGCTA CAGTTGACAT CAGCGATCAG
GATAAAACCT GGATCCAGCA GACGGAAACA GCTAACGGCG GTGGCTCCAA GTAA
|
|---|
| Protein sequence | MAEMDTSSSG GKGKHQGTKS KKQSTRVDMT PMVDLGFLLI TFFMLTTTMS KPKTMDLIMP
KDTKDEKEQN KVKESTALTI LLGKKDRVYY YEGLAQDPNA SANPEFFKAT TFANTGGIRD
VIIKKRDEVA QLRNSKGEPE DVVIIIKADN DATYKDFVDI LDEMAINRIQ RYATVDISDQ
DKTWIQQTET ANGGGSK
|
|---|
| |