Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_1354 |
Symbol | |
ID | 8357472 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | - |
Start bp | 1618219 |
End bp | 1621911 |
Gene Length | 3693 bp |
Protein Length | 1230 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 644963512 |
Product | TonB-dependent receptor plug |
Protein accession | YP_003121053 |
Protein GI | 256420400 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.173516 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 39 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTATCGAA ATTATGCCAT CAAAATTGGC GTGCCGGTGA GGCATGTCCA GCAACTATTG CGAATAATGA AATTATCAAC CATCCTCTTG CTGGTAGGTT TCATGCAGGT AAGTGCAGCT GTATATGCAC AAAAGATCAC CTTATCGGAG CGCAATGCCG AGCTGAAACA ACTGTTCACA AAAATACAGG AGCAGAGTGA CTACGATTTT GTTTATACCC GGCAACAGCT GCAAACGGCA AAGCCGGTCA ATATCCATGT CGCCGGCATG GAGCTCAGCG ATGTATTACG CCTTATTTTC AAAGATCAGC CTTTAACGTA TATTATCGAC GATAAGACAA TTGTTGTCAA AGACAGGGAT ATCGTCTTCC CCCCTGAAGC GCCCGATCCT TTTGATATAC AGGGACAGGT ACTGAATGAA AAAGGATTGC CTTTGCAGTC TGCCACCGTA AGGATAATTG GTACCCGGCA ACAGCAGTTG ACCGACATTG ACGGAAAGTT TTTCTTTACA GATGTACTTA AGCAGGGAAA GTTCATTGTC TCATATATTG GTTACCGGAC AGATACCATT GCCATCAGGG GGAAAACAAC ATTCATTATC CAACTTGATC CACAGGCGAA AGCTATACAG GAGATCAGCA TTGTATCAAC CGGTTACCAG GAGCTACCCA GAGAACGCGC TACCGGCTCA TTCGAAGTCG TATCTAAAGA ACAGCTGCAG CATAGTACGG ATATCAATCT TGTCAGACGG CTGGAAGGGA TCACTAACTC AATGGATTTC AGGAATGATC TACGTCCGGT CAATTCCAGC AACCCCAATG CACAACGCTC TCCACTGGCG AATCTGACCA TCAGGGGAAA GAATACATTA AATGAATCTG TCAATGCCGA TCTGAATGGC AACTATAGTG GTCAGCCGCT GGTAGTGATA GACGGTATCG CCAGCCCCTA TTCCATTGAT AAGATCAATC CGAATGATGT AGAAAGCATT ACCATTCTCA AAGACGCAGC AGCAGCTTCT ATATGGGGAT CACGGGCCGC AAACGGGGTA ATCGTTGTAA AGACCAAGCG CGGTGCATAC AACCGGGCAC TCCGGGTATC ATTCAACAGC AATGTTGCTA CTTCCGGTAA AGTAGATCTG TTCTATAACA AGACCATGTC TGTTTCTGAT CTGATAGACG CACAGATGTT ACAGTTCATC AATGCCGACA GGTCTTTACC TTCTATCAGT ATCAGCAGCC TTTATGGTCA GGAGCCTGTT TCACCGGTTG CGGAGATCAT GGATGCCTGG AAAAATAAAG GCACACTCAC TGAGGCAGCA GCCATGGCAC AACTGGATGT GCTCAGACAA AACGATATCA GAAGAGATTA TACAAAATAC TTCCTGCGCA ACCCTATCAC TCAAAGCTAT TCACTTGCCG TAGATGGAGG TACCGAACAC TCCAACTACC GGCTATCTGC CGGTTATGAC AGAGGCATCA ACAATACACG CAATTCAAGC CAGGATCATG TGGCACTGAC GCTCAACGCT GCTTTCCGTC CGCTGAAACA CCTGGAACTA CAGGGTAACA TCGCTTATAA TGTGCAACAG AATAACGAAC AGGCTCCAGA TAACAGGATC ACCGGTGTAT CCAGTGCCCC TTTTTATCCA TACAGCCGCC TGGCCGACGA TGAAGGTCGT CCGCTGGAAC TGACGAAGAT GTACAGACCT GGTTTCGTAG AGATGTTTGA GAAAACATAC CCCACACAGT TCCTGAGCTG GCGCTATACA CCCCTTGAAG ATATCAATGA GGGGTATAAC AAATTAAAAG CACAAAGCCT TAATATGAAT TTCAGCGCTA ATTACAGGAT CGTGGAAGGA CTGTCCCTTC AGGCTACCTA CAACTACAAC ACCGGCCGTA GTAATGATAA CACCCTGTAC AGACAGCAGT CTTTTTTCAT GCGCAACCTG ATCAATTATT TCACTACTTC GCTCGCCTCT GCTAACCCCA TGACGGGCGA TCCCGTCACT CCGTTTGTAA GACAGCTGCC ATTGGGAGGA CAGTACAATA CCAGTCTGAC CCGGTCCAGC AATCAGACGA TGAGAGGACA GCTGAACTTT GACAGGACAT GGAAGGCTAA ACACCAGATT TCTGCTATTG CCGGTCTGGA CGTGGCACAG AACTACAGTA TCGTTACCAG CAATGGTTTC TACGGATACG ACGAAAATAC ACTGCAAAGC AATAACCGCC TCGATTATAA GACCATGCTT CCTATTGTCT TCTCTGAAGA CTTCAGCGGC TACAATGGCG AATATATTCC CAATCTTGAC GCAGGGTTTA TCGACAATAA AGTGAGAACT TTCAGCTGGT ATACCAATAT GGCATATACC TTCGACAGTC GTTATACCTT ATCTGCCAGC TTCCGGTCAG ATCTTTCCAG TGAATTCGGA CGCGGCACAA ACCGTAAAGG AGCGCCTTAT TACTCTGTTG GCGGCGCATG GAATATCCAC CATGAGAAAT TCTATCATTC AACACTATTC CCAACACTTA CGTTCAGAAC GACGTTTGGC TACAACGGTA ACGTAAACCC TTCTGTACTG GCCCGCCCGC TTGTTACATA TTCTATTTTC GATGGCGTCA ACGGCCTGCC ATATGCATAT ACCAGCTTTG GTACCGGTAT CACCAACAGT AAACTGCGTC CGGAGAAGAC AGGTATTCTG AATATAGGTG TTGATTTCGC GATGAAAGGC AACCGTCTTT CGGGTAGCGT ACAATACTTT ATCAAGAAAA CATCCGATCT GATTGCAGGT GGGGCATTAG ATCCGAGTAC AGGCTATACA AACATCACTT ACAATACAGG CAACTTACTG GGCCATGGTA TTGACATATC CCTCAACTCG CTGAATATTC AGCGGGGGAA ATTCAGATGG AACACCAATT TCCTCTTCAG CTATAACCGT GTAAAAGTGA CAAAACTGTA TGCGACGGCA GCAAGTGCCG CCGGCCAGGT AGTATCCAAC AGCTCCGGCT CTTACAATGA AGGCTACGAT CTTTCCCGCT TATTCGGATA CAGATGGGCA GGACTGGACC CGGCAACCGG CGATCCACGT GGATATGCAG ATGGGCATAT TGTCACTATC TCCAATACTC CTGACGGCAA CAGCGCCTAT AACAGTTTGC AGACCGCTCC TATTTCTTCA TTAAGATATT TCGGTTCAGC AGTACCGGTA TGGTATGGTT CCCTGCGTAA TACCTTTAAT TATGGCCCCT TCTCTGCAAC GGCAGGCATC CTGTACAAAA TGGGTTATTA TGTAAGAAGA CCTCAATCGC AGGTATTAAA CTACAGTCAG CTGTATAGTA CCAACGCCAC AATACAGGGT ATAGAGTACC AGGACAGGTG GAAACAAGCC GGAGATGAAT CACATACGAA TGTGCCATCT GCTGTTTATA CCGCCACTAA TCAGAACCGC GATAACTTCT ATTATTACTC GGAGATAAAT GTCCTGAAGG GCGATCATAT CCGCTTACAG GAGATTAATC TCTCCTACCT GATACCCGCT GCCAAAAGCA AGTTTATCAG GAATCCAAGG ATATATGCCA ACATCAGTAA TCTGGGGATT ATCTGGCGGG CCAATAACAA AGGGATCGAT CCGGAAGTAT TCGACTATCC CAATCCAAAG TCCTACAGCC TTGGCTTTTC TGCAAACTTT TAA
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Protein sequence | MYRNYAIKIG VPVRHVQQLL RIMKLSTILL LVGFMQVSAA VYAQKITLSE RNAELKQLFT KIQEQSDYDF VYTRQQLQTA KPVNIHVAGM ELSDVLRLIF KDQPLTYIID DKTIVVKDRD IVFPPEAPDP FDIQGQVLNE KGLPLQSATV RIIGTRQQQL TDIDGKFFFT DVLKQGKFIV SYIGYRTDTI AIRGKTTFII QLDPQAKAIQ EISIVSTGYQ ELPRERATGS FEVVSKEQLQ HSTDINLVRR LEGITNSMDF RNDLRPVNSS NPNAQRSPLA NLTIRGKNTL NESVNADLNG NYSGQPLVVI DGIASPYSID KINPNDVESI TILKDAAAAS IWGSRAANGV IVVKTKRGAY NRALRVSFNS NVATSGKVDL FYNKTMSVSD LIDAQMLQFI NADRSLPSIS ISSLYGQEPV SPVAEIMDAW KNKGTLTEAA AMAQLDVLRQ NDIRRDYTKY FLRNPITQSY SLAVDGGTEH SNYRLSAGYD RGINNTRNSS QDHVALTLNA AFRPLKHLEL QGNIAYNVQQ NNEQAPDNRI TGVSSAPFYP YSRLADDEGR PLELTKMYRP GFVEMFEKTY PTQFLSWRYT PLEDINEGYN KLKAQSLNMN FSANYRIVEG LSLQATYNYN TGRSNDNTLY RQQSFFMRNL INYFTTSLAS ANPMTGDPVT PFVRQLPLGG QYNTSLTRSS NQTMRGQLNF DRTWKAKHQI SAIAGLDVAQ NYSIVTSNGF YGYDENTLQS NNRLDYKTML PIVFSEDFSG YNGEYIPNLD AGFIDNKVRT FSWYTNMAYT FDSRYTLSAS FRSDLSSEFG RGTNRKGAPY YSVGGAWNIH HEKFYHSTLF PTLTFRTTFG YNGNVNPSVL ARPLVTYSIF DGVNGLPYAY TSFGTGITNS KLRPEKTGIL NIGVDFAMKG NRLSGSVQYF IKKTSDLIAG GALDPSTGYT NITYNTGNLL GHGIDISLNS LNIQRGKFRW NTNFLFSYNR VKVTKLYATA ASAAGQVVSN SSGSYNEGYD LSRLFGYRWA GLDPATGDPR GYADGHIVTI SNTPDGNSAY NSLQTAPISS LRYFGSAVPV WYGSLRNTFN YGPFSATAGI LYKMGYYVRR PQSQVLNYSQ LYSTNATIQG IEYQDRWKQA GDESHTNVPS AVYTATNQNR DNFYYYSEIN VLKGDHIRLQ EINLSYLIPA AKSKFIRNPR IYANISNLGI IWRANNKGID PEVFDYPNPK SYSLGFSANF
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