| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_0565 |
|---|
| Symbol | |
|---|
| ID | 8356671 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 688888 |
|---|
| End bp | 690429 |
|---|
| Gene Length | 1542 bp |
|---|
| Protein Length | 513 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 644962711 |
|---|
| Product | RagB/SusD domain protein |
|---|
| Protein accession | YP_003120264 |
|---|
| Protein GI | 256419611 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.110702 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 56 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGATTGA ATAGAATAGT CATCATATTA TCACTTGCAT TCGGATGTGG ATTATCCTCC
TGCTCTCTCG ACGAGCAGCT GGGATCTACA CTGACCCGCG AGCAGGCAGA TTCACTGATC
GAGGTGCCAG CGCTGCTGGT ATCTGCCTAT AATGGTCTTC AGTTACCTTA TCAGGACCAG
TCTAACTTCT GGGCACTCCA GGAAATGACC GCAGATGAAG CGGTGGCCCC TACCCGTGGT
GGTGACTGGG ATGATAACGG TGTATGGCGT GCATTGAAAC TGCACAACTG GACACCAGAT
CATACTTATA TCAGCAATAC CTTTTCAAAT ATCCTGCAGC TGCAGTTCCT CGCTTCGAAT
GTACTCAGCT TCAAACCTTC CGCTCAACAG GCGGCTGAAG CGCGCTTCCT GCGTGCATAT
GCGATGTATA CAATCCTGGA TGGATGGGGA CAGGTGCCTT TCCGTAATCC GGGAGATACC
TTGCTGAATG CGCCTAAGGT GATGAATTCG ACGGAGGCGA CTACTTATAT TATCGGTGAA
CTGACCGAGA TAATAAATGT ACTCGACGAA AACGTGCCTG CTTACACCGC CAACAAGAAT
GCCGCAAGAG CCCTGCTGAT GAAGTGTTAT CTGAATAAAG GTGCATTTGC CAACAGGCAG
TCGCCAACAT TTGACGCTGG TGATATGCAG AAGGTAATCG AACTGGCAGA TGCGATCACG
GCCAGTGGTA AGTATAGTCT GACGAACTAC TTCGACAACT TTGCTTATAA TAATGATGCC
GTGTCAAAAG AAAACATCTT CACACAGCGT AACGGACCTG GCTTCAGTAC AGTGAGAAGT
GGTAATGCTG TATACTGTCA CTGGGCGCCT ACCCTTCATT ACAACCAGGA TCCCAGTGGA
TGGAATGGAT ATGCGACGAT TTCTGACTTC TATGACAAGT TTGAAGCAAC AGACGTACGT
CGTGGCGGCG CTTATCCGGG CGTTACAGAT AAGAGTGGTC TGAAAGTAGG TTTCCTGGTT
GGCCAGCAGG TAAATGCAGC CGGTACCCCG TTGAAAGACA GAAAAGGTAA TCTGTTGATC
TTTACCCGTG AGTTGAAATT ACAGGAAACA GATCCGAACA CGCTGGAAGT AACCGGTATC
AGGGTCGTGA AATATCCACC GGATATGACG AATAATGAAA CCAAGGGAGG TAATAATGCG
AATAATGATT ACGTGTTCCT TCGTTATGCA GATGTACTGT TGATGAAAGC GGAAGCCCAG
TTGCGGACAT CTAATGCCAG CGGAGCGCTA ACCATTGTTA ATGATATAAG AGCACATCGT
CACGCGAGTA CCTGGACTTC CATCGATCTG AATAAACTGA TCGATGAAAG AGGCCGTGAA
CTGTACTGGG AAGGATGGCG CAGAGAAGAT CTGATCCGCT TTGGTAAGTT CCTTGAACCA
TGGCAGCTGA AACCATCAGA CAACCCTAAA AACCTGTTGT TCCCAATACC CACTAAAGAC
CTGGCTGTTA ATAAGAACCT TAAACAAAAC GACGGCTATT AA
|
|---|
| Protein sequence | MRLNRIVIIL SLAFGCGLSS CSLDEQLGST LTREQADSLI EVPALLVSAY NGLQLPYQDQ
SNFWALQEMT ADEAVAPTRG GDWDDNGVWR ALKLHNWTPD HTYISNTFSN ILQLQFLASN
VLSFKPSAQQ AAEARFLRAY AMYTILDGWG QVPFRNPGDT LLNAPKVMNS TEATTYIIGE
LTEIINVLDE NVPAYTANKN AARALLMKCY LNKGAFANRQ SPTFDAGDMQ KVIELADAIT
ASGKYSLTNY FDNFAYNNDA VSKENIFTQR NGPGFSTVRS GNAVYCHWAP TLHYNQDPSG
WNGYATISDF YDKFEATDVR RGGAYPGVTD KSGLKVGFLV GQQVNAAGTP LKDRKGNLLI
FTRELKLQET DPNTLEVTGI RVVKYPPDMT NNETKGGNNA NNDYVFLRYA DVLLMKAEAQ
LRTSNASGAL TIVNDIRAHR HASTWTSIDL NKLIDERGRE LYWEGWRRED LIRFGKFLEP
WQLKPSDNPK NLLFPIPTKD LAVNKNLKQN DGY
|
|---|
| |