Gene Cpin_0389 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_0389 
Symbol 
ID8356495 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp464475 
End bp465038 
Gene Length564 bp 
Protein Length187 aa 
Translation table11 
GC content46% 
IMG OID644962536 
Productribosome recycling factor 
Protein accessionYP_003120089 
Protein GI256419436 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0233] Ribosome recycling factor 
TIGRFAM ID[TIGR00496] ribosome recycling factor 


Plasmid Coverage information

Num covering plasmid clones31 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.0303033 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAAGATG ATCTAACGTT AATAATAGAA GATGCCACCG CAACCATGCG TAAGGCTATC 
GGACACCTGG AATCGGAACT TACCAAGATC AGGGCCGGTA AAGCCAATCC GCAGATACTG
GACGGAATTA CGGTAGACTA CTATGGTTCG CCTACTCCCC TCGCGCAGGT AGCTAATATC
ACTGTGGCAG ATGCCCGTAC ACTGACAGTT CAGCCATGGG AAAAAAATAT GCTCCAGCCT
ATTGAAAGGG CTATCATCGC CTCTAACATC GGTATTAACC CACAGAACGA CGGTATCATC
ATCCGTATGT TCCTGCCGCC ACTGACAGAA GAGAGAAGAA AGGAATTTGT TAAACGTGCA
TTGAATGAAG GTGAGCAGGC AAAAATAGCT ATCAGAAATA TCCGCAGAGA TGCGATCGAA
GGCATCAAGA AACTGCAGAA AGATGGTCTG AGCGAAGATA CCGCAAAAGA CGCCGAAGCA
GATGTACAGA ACCTGACCAA CAAATATATT GAACTGGTAG ATAAACACAC CGCTCAGAAA
GAGAAGGAAA TCATGGTTAT CTAA
 
Protein sequence
MQDDLTLIIE DATATMRKAI GHLESELTKI RAGKANPQIL DGITVDYYGS PTPLAQVANI 
TVADARTLTV QPWEKNMLQP IERAIIASNI GINPQNDGII IRMFLPPLTE ERRKEFVKRA
LNEGEQAKIA IRNIRRDAIE GIKKLQKDGL SEDTAKDAEA DVQNLTNKYI ELVDKHTAQK
EKEIMVI