| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_0356 |
|---|
| Symbol | |
|---|
| ID | 8356461 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 423682 |
|---|
| End bp | 427068 |
|---|
| Gene Length | 3387 bp |
|---|
| Protein Length | 1128 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 644962502 |
|---|
| Product | TonB-dependent receptor plug |
|---|
| Protein accession | YP_003120056 |
|---|
| Protein GI | 256419403 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.36308 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 51 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGTACTT GTGTTTACCA GCTGCTGGTG GCCCTGTCGT TTACCACCAT CGTATTTGCC
AGGTCCGGCA AAGCCCAGGA AGTATTACAG CAAAAGATCT CCCTGGAAGT AAAACAACAA
CCTGTAGGTA AAGTACTGAA CCAGATTGAA AAAATGGTGG ATGTCAAATT CCTCTACAGT
TCCTCTCTTA TCCAGTCTGA CCGCAAAGTA GACGTAGCTG CTGATCATGA AACACTGGCA
GCTATCCTGG ATGAATTACT CCTTCCTTTG CAACTCCAGT ATCATGTATC TGGTCGGCAG
ATTGTGCTAA ATCGATTACG CTCCACTGCT GATGCCGGAC AACAACAGCC TGTGCGTATC
ACCGGTCAGG TAATTGACCC GAAAGGTGTA CCCTTGCCTG GTGTAAGCGT TAAGCTGAAA
GGCACCGCTA CAGGCGCCAC TACCGATGCC AGTGGTAATT ATGGTTTTAA CGTACCTGCA
CTCAGCGGTA TCCTCATCTT TACCTATGTA GGTTATGCAC CTAAAGAGGT AGAGATCAAT
GGTAAGCACA CTGTGAACAC GACACTGGAA TCATCGTCTA CCGCACTGGG CGACGTTGTG
ATCGTGGGAT ATGGCTCACA GCGCAAAGAA TCATTAACAG GCGCTATCTC TTCCGTAACC
AGCAAAGAAC TCAACGGCAT ACACGCCGGT TCTACTGTGA GTGCTGGTCT GGCAGGAAAG
ATCGCCGGTG TGTCTTTTCG TATGTCTGAT GGTCGTCCCG GCGCCAGCGC TTCCATACAG
ATCAGAAACA TGGGTAATCC ACTGTATGTA ATTGATGGTA TCCAGCAGGA TGAAGGACAG
TTCAATAACA TCGCTCCTAA TGATATTGAA AGCATTACCG TACTGAAAGA CGCTTCCGCG
GCTATCTATG GTATGAGAGC TGCAAACGGC GTTGTCGTAG TAACTACTAA ACGCGGTAAA
CTGGGCAGTC GCAACACCAT CAACGTAAAC GTTTACAGAG GATGGCAGAA CTGGACCCGT
TTCCCGAAAA CAGTCAATGC GTATGAATGG ATGGTAGGTA AAGCAGATGC AGATGTGAAT
CAGACCGGCC ACACTACTAT CACACAGGCA GAACTGGACA AGTGGAAAGC TGGTACGGAG
ACAGGCTATA AAAGCTTTGA CTGGTACAAG TTCATTGTAA AAGGAAACTC TCCGCTGACG
TCTGCAAACC TGAACTTCAC TGGTGGCTCT GAGCGTATCA ATTATTATGT ATCTGCCACT
CACCTGAGCC AGAACTCTGT ACTCGGCAGG GAATTTACTT TTTCAAGATC CAATGTACAG
AGTAATATCG ACGCCCGCGT ATCTGACCGT TTCAGAATCG GCGCGCAGAT CAATGGCCGT
GTGGAAACGC GCGATCAGCC AGGTGTACCA GGAGGTGATG ACTACTGGGC AGCACGTTTC
GCGATCCTGC GTAACAGACC AACAGAACGC CCTTACGCCA ATGATAATCC TGACTATCCG
AATGACATCG GTCACAACAC AGAGAACTGG GCGCTCCAGA ATAAAAAATT GTCTGGCTAC
TGGCGCAGTG ACTGGCGTGT AGTACAATCT AACCTGACCG CGGAATATCA GTTCCCGCTG
GAGGGACTGA CTGCAAAGGG TCTGTTCTCT TATTACTATG CAAATGAAAT TATGAACGGA
CATGAGTATA CTTATAAAGT GTATACCTAC AATCCGGCAG ACGATACATA CAACGTAACC
GGCGGTAGCT CCAACCCTTA CCGCGAAAGG CGTAACAGAA CCATTCTGTC GCCTACTTTA
CAGGCTCAGC TGAATTATAA TAAAACGTTT GGTAAACACG TAATAGGTGC TACACTGGTA
GCTGAAAGGA TCAAAAGAAG AGATCTTAGC ACCTATGTAC ACTCCGTACC AACACTCAAC
CAGTTACCAT TGATCTACTT CTCGACAATG GATACTTACA ATGACTTCGA TAATACAGAG
GCAAGACTCG GTTATATCGG TCGTGTAAAC TATAACTATG GCGGTAAGTA TTATATTGAA
CTCTCTGCAC GTCGTGATGC CTCCTGGAAA TTTGCACCGA ATAAAAGATG GGGTACATTC
CCTTCCGTAT CCGGTGGATG GAGAGTAAGC GAAGAGAAAT TCTTCAGCGG TGTGAGCAAA
AAGGCTGTCA GTGAACTGAA GCTCCGTGCT TCCTTTGGTA GAATGGGGGA TGATGACATC
GGAATCGGTG CATATGATTA TCTGGCAGGT TATAACTATA ACGCATCTAC TGTTATCCTG
GATGGTAATG CAGTGATCGG CTCCCGTAAC AAAGGTGTAC CTATCAGCAA TATCTCCTGG
TTTGTAAGTC AGACACTGGA CGTAGGTCTG GATTATGCAT TATTCAATGA CAAAATTACC
GGTGCGATCG ACGTGTTTAA CAGAAAGAGA ACCGGTTTGC TGGGTTCTAA ATACGATATC
CTCGTACCTA GTGAACTTGG TTACAATCTG CCATCTGAAA ACGTAAACAG TGATCAGGTA
GCTGGTTTCG AAGGTTCTAT CGCCTACTCC GGAAAAGTGA AAGACGTGAG CTTTAGTATC
GGTGGTAACT TTTCCATCGC GCGTCCGAAA ACACTGAACA CTTATAAGCC GGTATTCAAC
AACTCACTCG ACCATTATTT CAACTCACGC GAACAACGTT TTGTAAACGC TTTCTGGGGA
TTTGAATCAG CAGGACAGTT CCAGTCACAG GAGCAGATCA ACAAATATCC TGTGAACGTG
GATGGTTTTG GTAACAAAAC TTTATTACCA GGCGATATCA TTTATAAAGA CCTCAACAAC
GATGGTATCA TCAATGATCA GGATAGACGT CCGATTGGTT ATGGTACCGG CAGAAACCCA
ATCCTGAACT TTGGTTTTAG TCTTTCTGCA AGCTGGAAAG GTTTTGACGG CCGTATTGAT
TTCTCCGGTG GTGGCGGTTA TTCCTTCAAC CGTAACTGGG AAACACGTAA TCCATTCCAG
AATGGTGGTA ACCTGTTTGC CGACCTGTAT AACGACCGTT GGCACAGAGA GAATCCACTG
GACCCTAACA GTCGCTGGAT TCCAGGTAAA TACCCTGCAC TCCGTTTCAA TGATGGTGGT
CATAGCAGTT ACGGAAGGGA TTCTGATTTC TGGCTGACCA ATGTTAAATA CCTGCGTGCC
AGAACGATGG AGCTGGGATA TACTATTCCG AAAAATGTGC TCAGTCGTGT GAAAATAGAA
AGAGCCCGTT TCTACGTGAA TGCGAATAAC CTCTTCTCTA TTGACAACCT CAAGAAGGTG
GGTATAGATG CGGAAATCGT GGATGATAAC GGTCTTACCT ATCCGCAAAG TAGATTTGTG
AACGTTGGTT TTGAACTTTC TCTCTGA
|
|---|
| Protein sequence | MRTCVYQLLV ALSFTTIVFA RSGKAQEVLQ QKISLEVKQQ PVGKVLNQIE KMVDVKFLYS
SSLIQSDRKV DVAADHETLA AILDELLLPL QLQYHVSGRQ IVLNRLRSTA DAGQQQPVRI
TGQVIDPKGV PLPGVSVKLK GTATGATTDA SGNYGFNVPA LSGILIFTYV GYAPKEVEIN
GKHTVNTTLE SSSTALGDVV IVGYGSQRKE SLTGAISSVT SKELNGIHAG STVSAGLAGK
IAGVSFRMSD GRPGASASIQ IRNMGNPLYV IDGIQQDEGQ FNNIAPNDIE SITVLKDASA
AIYGMRAANG VVVVTTKRGK LGSRNTINVN VYRGWQNWTR FPKTVNAYEW MVGKADADVN
QTGHTTITQA ELDKWKAGTE TGYKSFDWYK FIVKGNSPLT SANLNFTGGS ERINYYVSAT
HLSQNSVLGR EFTFSRSNVQ SNIDARVSDR FRIGAQINGR VETRDQPGVP GGDDYWAARF
AILRNRPTER PYANDNPDYP NDIGHNTENW ALQNKKLSGY WRSDWRVVQS NLTAEYQFPL
EGLTAKGLFS YYYANEIMNG HEYTYKVYTY NPADDTYNVT GGSSNPYRER RNRTILSPTL
QAQLNYNKTF GKHVIGATLV AERIKRRDLS TYVHSVPTLN QLPLIYFSTM DTYNDFDNTE
ARLGYIGRVN YNYGGKYYIE LSARRDASWK FAPNKRWGTF PSVSGGWRVS EEKFFSGVSK
KAVSELKLRA SFGRMGDDDI GIGAYDYLAG YNYNASTVIL DGNAVIGSRN KGVPISNISW
FVSQTLDVGL DYALFNDKIT GAIDVFNRKR TGLLGSKYDI LVPSELGYNL PSENVNSDQV
AGFEGSIAYS GKVKDVSFSI GGNFSIARPK TLNTYKPVFN NSLDHYFNSR EQRFVNAFWG
FESAGQFQSQ EQINKYPVNV DGFGNKTLLP GDIIYKDLNN DGIINDQDRR PIGYGTGRNP
ILNFGFSLSA SWKGFDGRID FSGGGGYSFN RNWETRNPFQ NGGNLFADLY NDRWHRENPL
DPNSRWIPGK YPALRFNDGG HSSYGRDSDF WLTNVKYLRA RTMELGYTIP KNVLSRVKIE
RARFYVNANN LFSIDNLKKV GIDAEIVDDN GLTYPQSRFV NVGFELSL
|
|---|
| |