| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_0274 |
|---|
| Symbol | |
|---|
| ID | 8356379 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 323190 |
|---|
| End bp | 325565 |
|---|
| Gene Length | 2376 bp |
|---|
| Protein Length | 791 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 644962420 |
|---|
| Product | TonB-dependent receptor |
|---|
| Protein accession | YP_003119974 |
|---|
| Protein GI | 256419321 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 57 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCAAA ACAAAATCCT GGTGCTGCTC CTGTTTTTGG CGTTTCCAGG CCAGCAACTA
TTTGCCCAGG AAAGATACTA CCGATTGCCC GTTACAGTAC GGGACACTTC TGGTCAAAGT
CTCATAGGTG TGACGGTTCG CGTAAACGCA GCAGATAACA CATCGAAAAC CATTTCGGGC
GGTTCGACGG ATGGAGAGGG CCATTTTGAA TTCCGTCTTC CAAAAGGTAT CTATATTCTT
TCCCTTACCT ATATCGGTTT TCAGCCCGTC AGTCAGCGCA TCAATGTCCC TTCAGATGGA
GAGTTTAAGT TAGTGATGCG TAGTGGCGGT ACTGGGCTGC AAGAAGTAAT AGTCAGGGGA
CAAAGCAAGA CCAACCCGGT TAAAAATCTG GAAATGGGGG TGCAATCTAT CAATCTGTCT
ACACTGCGGA AGATGCCTGC GCTGCTTGGA GAAGTGGATG TGGTGCGTAG TGTATTGTCG
CTACCAGGTG TAAGTTCGGT AGGGGAAGGA TCAAGCGGTT TTAATGTCCG TGGAGGAAAC
GTTGATCAGA ATCTGGTATT GATGGATGGC GCCCCTGTTT TCAATACATC GCACTTGTTT
GGATTGTTCT CTGTGTTCAA TCCCGAGGTG GTACAGGATG TGAAGCTGAT AAAAGGGGGG
ATAACGCCGG ACTATGGCGG GAGATTGTCT TCAGTGATGG ATATTAAACT GAAAAGTGGC
AGTCCTGATT CTCTCCGGGG GGCCGGGGGA ATCGGATCCG TATCAGCCAG ACTGTCCGCA
GGCTTTCCCA TTTTGCATAA CAAAGGGTCT GTTTTCATTG CGGCCCGCCG GACCTATGCC
GATCAGTTCC TAAAACTCTC TTCAGACGAA AATCTCAATT CCACCGTTGC CTATTTTCAG
GACTTTAACG GTAAAGTAGA TTATCAGCTT AGTACAAAAG ATCGCATCAG TCTCGCCGGG
TACTGGGGGA ACGATAAACT GGGTCTGCAG AAAGATTTTA CCATAGGCTA TGATAACGCG
AATGCTGCTG CAACCTATCT TCATGAATTT TCTTCAGGTT TTTCTGCGAA GACTACATTC
TTATTTAGCC AATACAGGAG TAATCTTGGT GTACTACAGG AGCCGCAATC GCTGCTGAGT
AAACAGTATA TCAGACAATA CGCGTTAAAA ACCGACTGGC ACTATCGAAG GAATGAAGCG
ATTGATCTGA CCTTCGGATT ATCCGCTATC CGGTATGATG TTAATCCAGG TGTACAAACA
CCGCTGACAG AGAGCTCGGT CTTTAACACT ACTACATCGG CAAGACAGGC GGGTAATGAA
CTCGGTTTTT ACCTGAATAA TGCCCATAAA TTCAGCAAAA AGTTATCTGC CCAGTACGGT
ATTCGGTTTT CTTATTTCGG CGCTGTAGCG GCCCAAAATG GGCCTGTATA TACCTATGGC
GGTATGCCGG GCAAAGAGCT GTTACCTGTA CTGACAACGG AATTTAAGAA AGGGGCGGCT
ATAAAAAACT ATGGGAATGT TGAGCCGCGG GTATCCCTCA GATATTTGTT ATCAGAGAGT
GCTTCGATAA AAGCCGGTTA TAACCGGATG GCGCAGTATG TACACCTGAT CTCCGCTACC
ACAGCCTCTA CGCCGCTGGA CGCCTGGATG ATTTCGACCA ATAACATCAG ACCAGAATTG
GCCGACCAAT TCTCATTGGG GTATTTTATG ACAAAGCATA GCTATGAGCT GTCAGCAGAA
GCATACTACA AGACGATGAG TAATCAGATT GACGTGATCA ACGGGACAGA GCCGATTGGT
AATCAGGATG TTGAGAAGGA CCTTGTTTAT GGAAAGGGCC GTTCATATGG ACTGGAACTC
TACCTGAAGA AAAATACAGG GAAGCTGAAC GGCTTTGCCA GCTACACATT GAGTAAAACA
GAACGGCAGA TGAATGGTGT CAATAATGGG GACTGGTATA ATGCCAAGTA TGACCGTACC
CATAACCTGA ATTTGGTTGT TGTATATAAC TATAGCAACA AATGGACATT TTCTTCTAAT
TATGTCTATC AGACCGGCGT GGCTGCCACT TTTCCTTCCG GTCGCAGTGA GTTTCAGGGG
ATTATCGTTC CCTACAACAA CGGCGATTTA CGTAATAATT ACCGGTATAG TCCTTATAGC
CGGCTTGACC TTTCTGCCAC ATTATTCGTC CGGCATCGCG CAGGCAGCCG ATTTAGCAGT
AACTGGGTGT TTTCCCTATA CAATGTGCTG AACCGCAAAA ATGTGTATGC GCTATACTTC
AAACAGGATA ATGCCAACCC GAACAAAACA ATTGCGAATC AGTTGTCAGT CATCGGCTCT
ATTATCCCGG GTGTTACCTG GAATTTCAAC TTTTAG
|
|---|
| Protein sequence | MKQNKILVLL LFLAFPGQQL FAQERYYRLP VTVRDTSGQS LIGVTVRVNA ADNTSKTISG
GSTDGEGHFE FRLPKGIYIL SLTYIGFQPV SQRINVPSDG EFKLVMRSGG TGLQEVIVRG
QSKTNPVKNL EMGVQSINLS TLRKMPALLG EVDVVRSVLS LPGVSSVGEG SSGFNVRGGN
VDQNLVLMDG APVFNTSHLF GLFSVFNPEV VQDVKLIKGG ITPDYGGRLS SVMDIKLKSG
SPDSLRGAGG IGSVSARLSA GFPILHNKGS VFIAARRTYA DQFLKLSSDE NLNSTVAYFQ
DFNGKVDYQL STKDRISLAG YWGNDKLGLQ KDFTIGYDNA NAAATYLHEF SSGFSAKTTF
LFSQYRSNLG VLQEPQSLLS KQYIRQYALK TDWHYRRNEA IDLTFGLSAI RYDVNPGVQT
PLTESSVFNT TTSARQAGNE LGFYLNNAHK FSKKLSAQYG IRFSYFGAVA AQNGPVYTYG
GMPGKELLPV LTTEFKKGAA IKNYGNVEPR VSLRYLLSES ASIKAGYNRM AQYVHLISAT
TASTPLDAWM ISTNNIRPEL ADQFSLGYFM TKHSYELSAE AYYKTMSNQI DVINGTEPIG
NQDVEKDLVY GKGRSYGLEL YLKKNTGKLN GFASYTLSKT ERQMNGVNNG DWYNAKYDRT
HNLNLVVVYN YSNKWTFSSN YVYQTGVAAT FPSGRSEFQG IIVPYNNGDL RNNYRYSPYS
RLDLSATLFV RHRAGSRFSS NWVFSLYNVL NRKNVYALYF KQDNANPNKT IANQLSVIGS
IIPGVTWNFN F
|
|---|
| |