| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_0031 |
|---|
| Symbol | |
|---|
| ID | 8356128 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 35061 |
|---|
| End bp | 38162 |
|---|
| Gene Length | 3102 bp |
|---|
| Protein Length | 1033 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 644962179 |
|---|
| Product | Protoporphyrinogen oxidase-like protein |
|---|
| Protein accession | YP_003119741 |
|---|
| Protein GI | 256419088 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG1232] Protoporphyrinogen oxidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.00000538665 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 51 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAGTCAA AAAGAAAAGC CATTATCATT GGAGCAGGTC CTGCTGGATT GACTGCTGCT
TATGAGATGT TACAGCGTAC TGATATTATC CCTGTTATAT TAGAGAAAAG CGGAGATATA
GGTGGTATCT CAAAGACAAT TAACTTTAAA GGCAACCGTA TGGATATCGG CGGCCACCGT
TTTTTCTCTA AATCAGACAG AGTGATGCAA TGGTGGTTGA ATATACTGCC ATTGGAAGAA
GGGAATGATA CACATAAGAT CTCATATCAG AATAAAACGA GAGAAATAAA TAGAAAAGAC
TTCCCTGGCA TTAAGAGCGA TGATCCTGAT AAAGTGATGC TGGTGCGCAA CCGGCTTTCC
AGGATTTACT TTTTGCGGAG GTTCTTTACC TATCCTATTA CATTATCCGT AGACACTTTG
AGGAAGCTAG GTGTTGGCCG GACGATCGCC ATTCTCATAT CCTATTTATG GGCGCAGTTA
TTCCCTAAGA AGCCAGAGAA GAGTCTGGCT GATTTCATGA TTAATCGCTT TGGAAAGACT
TTATATAATC TCTTTTTTAA AGACTATACG GAGAAAGTAT GGGGAGTACC ATGTAATGAG
ATCCCTGCAG AATGGGGGGC ACAGCGTATC AAAGGGGTAA GCATCCATAA GGCTATTGAA
CACGCAATAC AGGAATTATC AAAAAAGAAG ACAAAGAATC AGGGGGATGT CGCACAGAAA
GGAACAGAAA CGAGTCTGAT AGAAAAATTC TTCTATCCTA AGCTAGGACC AGGACAGCTG
TGGGAGGAGG TAGCGAGACA GGTACAGGAA ATGGGCGGTA TTATCCACAT GCATTGTGAT
GTAAAGAATA TTTATACAGA AGATAATAAG GTGACAGTGG TAACGGCTGT AAACAGGCAG
ACTGGTGAAG AAATGAGATT GACAGGTGAA TACTTCTTCA GTACAATGCC TGTTAAGGAG
TTAATAGGCG GCATAGTAGG TGACGTACCG GTTCCCGTGA GAGATATTGC ATCTAAACTC
CAATATAGGG ATTTCATTAC GGTGGGTATT TTGTTAAGGA GATTATCTTT CCTAGATAAG
CACACCGGTG AATGGAAGCC TTTGAAATTA GAAGATACCT GGATATACAT CCAGGAGAAA
GACGTGAAAG TAGGCCGTCT ACAACTATTT AACAATTGGA GCCCATATAT GGTTAAGGAC
CCTGACACCG CCTGGGTAGG AATGGAGTTC TTCTGTAATG AAACAGACGA CTTTTGGAAA
CTACCAGATA CTGAAATCGC CGCTCTGGCA ATCCGGGAGT TAGAGAAAAT AGGTTTGGCC
TCCACAGACA ATGTATTAGA TAGTACTGTT CTGAGAGTGG AAAAGACTTA TCCTGCATAT
TTCGGTGCCT ACGAGCAATT TGATAAAGTA AGAGCTTATA CAGATAAGCT GGAGAATATA
TTCCTGGTAG GACGCAATGG TATGCATAAA TATAATAACG CAGACCATTC CATGCTTACT
GCTATGGTCG CTGTGGATAA TATCATTGCT GGTGTCACAG CCAAAGACAA TATCTGGGCA
ATCAATACCG AACAAGAGTA TCACGAAGAG AAATCCGGTG AAGAGGTGCC TGTTGCTACC
GCCCCTAAAA AAGTCCCTTC GTTTAAGGAG TTTATATGGG AGCAACCCTG GAATAAGGCA
TTGATCTGGT TGGCAGGACT AGCAATCATT CTTCAATTCC TGATATTTAA ACATTTCTAT
CCATCTGCAG GGTTTATTGA TGGTGATTCT TATGTTTACC TGGAATCTGC ATACGGCAAT
TTTAGCATCA ATACCTATCC AATTGGCTAT TCGAAATTTT TAAGATTCTT CAGCACTTTT
ACTATTTGGG ATACAGCATT AGTGGGCTTC CAATACCTGC TGCTACAATC CAGTGCGCTA
ATGCTGGTAT TAACACTGGC TTATTTCTAC AAACCTGGGA AAGTGATATT TGGCTTGTTA
TTAGCAGGAA TGCTTTTTAA TCCCGTATTT TTTTTCATCG CTAACTATGT ATCCAGTGAT
GCGCTGTTTC TGAGTCTAAG TCTGATCTGG TTTACATTGT TGTTATGGAT ATTACATCGA
CCTAATAAAG GGTTGATCAT CTGGCACGCT GTAATTATCC TGTTGGCCTT TACTGTGAGA
TATAACGCGC TGTTTTACCC AATAGTGGCA GCTATTGCAT TTCTAATTAG CCGACAGCCA
TGGAGAATGA AGGTAGTCGG CATGTTGTCA AGCATGGTCC TGATAGCAGG ATTTGTCTGG
CATACCAGCA ATCAATATGA CCGGCTTACT GGTATTCGTC AATTCTCTCC TTTTAGCGGC
TGGCAGATGG CCAATAATGC CTTGTATGCT TATCGCTTTG TACAAGACGA ACCTCCACCG
CCCATGCCTG CGAAGTTTAA ACAACTCGAC AAGATGGTGC GAACTTACTT TGATACAACC
CGCAACATCT TCATGCATCA ACAAGAAATG ATGATTGCAA ATACCTGGTA TATGTGGGAT
CCTAAGTCTC CGCTGCAGCA ATATATGTAT CAAAAGTTCA AGAAAGATTC CACAGCGCAT
ATATTGAAGA AATGGGCGTC CGTAGGACCA CTGTTCTCTG AATATGGTGC TTACCTGATA
AAACAGTATC CAGTTACGTT TACCCAATAC TACCTGGTTC CTAATACCAT GAAGTACTAT
GCGCCACCGG TCGAGTTCCT GGATACCTAT AATATGGGTA AAGACAGTAT TGCGCCTATT
GGCCAACAGT GGTTTGGATT TGAATCCCGC AAGTTAAAAA CTCATTTCAA GGATCTGAAA
GTCACCATTC TCAACTTCTA TCCTATTCTT GTAGGAATGA TGAACGTTGT TTTCATATTC
AGCTTGTTTG GTTTTGTATT GCTGAAAGGA TTCAAATACA ATAAATCCTT GTCAGTCGGC
TTACTGTTGG CCTTCGGTTT ATGGATCATC AATTTTGGAT TTAGCGTATT CGCATCCCAG
ATCGCCTTGC GATTCCAGAT GCTGCCGATA TTAATATTTT TCTCTTTCGG ACTGTTACTG
ATAGATTATA TCTGGAAAGC AGCCAATAAT AAAATATCAT AA
|
|---|
| Protein sequence | MESKRKAIII GAGPAGLTAA YEMLQRTDII PVILEKSGDI GGISKTINFK GNRMDIGGHR
FFSKSDRVMQ WWLNILPLEE GNDTHKISYQ NKTREINRKD FPGIKSDDPD KVMLVRNRLS
RIYFLRRFFT YPITLSVDTL RKLGVGRTIA ILISYLWAQL FPKKPEKSLA DFMINRFGKT
LYNLFFKDYT EKVWGVPCNE IPAEWGAQRI KGVSIHKAIE HAIQELSKKK TKNQGDVAQK
GTETSLIEKF FYPKLGPGQL WEEVARQVQE MGGIIHMHCD VKNIYTEDNK VTVVTAVNRQ
TGEEMRLTGE YFFSTMPVKE LIGGIVGDVP VPVRDIASKL QYRDFITVGI LLRRLSFLDK
HTGEWKPLKL EDTWIYIQEK DVKVGRLQLF NNWSPYMVKD PDTAWVGMEF FCNETDDFWK
LPDTEIAALA IRELEKIGLA STDNVLDSTV LRVEKTYPAY FGAYEQFDKV RAYTDKLENI
FLVGRNGMHK YNNADHSMLT AMVAVDNIIA GVTAKDNIWA INTEQEYHEE KSGEEVPVAT
APKKVPSFKE FIWEQPWNKA LIWLAGLAII LQFLIFKHFY PSAGFIDGDS YVYLESAYGN
FSINTYPIGY SKFLRFFSTF TIWDTALVGF QYLLLQSSAL MLVLTLAYFY KPGKVIFGLL
LAGMLFNPVF FFIANYVSSD ALFLSLSLIW FTLLLWILHR PNKGLIIWHA VIILLAFTVR
YNALFYPIVA AIAFLISRQP WRMKVVGMLS SMVLIAGFVW HTSNQYDRLT GIRQFSPFSG
WQMANNALYA YRFVQDEPPP PMPAKFKQLD KMVRTYFDTT RNIFMHQQEM MIANTWYMWD
PKSPLQQYMY QKFKKDSTAH ILKKWASVGP LFSEYGAYLI KQYPVTFTQY YLVPNTMKYY
APPVEFLDTY NMGKDSIAPI GQQWFGFESR KLKTHFKDLK VTILNFYPIL VGMMNVVFIF
SLFGFVLLKG FKYNKSLSVG LLLAFGLWII NFGFSVFASQ IALRFQMLPI LIFFSFGLLL
IDYIWKAANN KIS
|
|---|
| |