| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cphy_3794 |
|---|
| Symbol | |
|---|
| ID | 5744746 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium phytofermentans ISDg |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010001 |
|---|
| Strand | + |
|---|
| Start bp | 4648777 |
|---|
| End bp | 4650348 |
|---|
| Gene Length | 1572 bp |
|---|
| Protein Length | 523 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 641294906 |
|---|
| Product | peptidoglycan-binding LysM |
|---|
| Protein accession | YP_001560880 |
|---|
| Protein GI | 160881912 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 39 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGGAACTCA TTAAAAAGAA CATACATATG AATAAGCTGA AATGTAAAAG CAATCTTCAA
GTAACCTTTG ACGATGATTT CAATGTACCG GATAGTAAAC CAGACATTAG TAAATTAATT
AAGTCGCAGG GGGAAATCAA ATTTAACGAT CAGAAAATAA ACAATGGTAA ACTCTATGCA
AATGGCTCGC TGCATTTTCA GGTATTATAT TTAAGTGATG AAACCAATCG TCCAATTCAT
AGCTTAAGTG GACAGATTCC TTTCGATGAG GTAGTTAACT TAAATGAATC CTGCAATCAT
GATACCGGAA CATTAAAATA CGAGATCGAA GACCTAACCG CTAGTATTAT TAATTCCAGA
AAACTTAGTG TAAAGGCTTT GGTTCGCTTA AGTGTTGCCG TAGAAGATTT GTATGATGAA
GAAAGTGCAG TATCTGTTGA TGCCGAACCT GATGTACAAT CCATATCCAA AACAATTGAC
GTTACCAATA TGGCTGTAAA CAAAAAGGAC AGCTATCGGT TCCGTGATGA GGTTGTTCTT
CCATCTGGTA AGAGCTGTAT CTCCGAAGTT CTATATAATA ATGTAGAATT GAAGAATGTC
GATGTGCGTC TGTTGACAGA TAAGTTCACT GCCAAAGGTG AGATTTCGTT GTTTGTGCTT
TACATAGGAG AGGGTGAAGA CAGCCCAATG GAATACTATG AGGCTGATCT ACCTTTTAGC
TCAACCATTG ACTGTAATGG CTGTTCCGAA GATATGACTC CTGACATCTC ACTCGATATC
GTTGGTAACA ACTTAAGTGT AAAACCAGAT GCGGATGGAG AAGAAAGAGT TCTTGACTTA
GAGACAATCT TAGATGTTTC CATTAAGATT TATGAGGAAA CTCAGATGCA AGTTCTTCAG
GATATTTATT CTCCAATGAG GGAAATAACT CCTGTTTACA AGGAAGCTAA GTATGAGAAC
CTTCTCATGC GTAATAACAA CCGCGCACGT ATTTCGGAAA GAATTCGATT AGATGAAGAT
AGTGCAAAAC TATTACAGAT TTGCCATGGA AATGGTACCG TTAAGATTGA TGATATTACT
CCAGTAGATA ATGGATTAGA AGTGGAAGGC GTCATTGACC TTAGCATCCT TTACATAAGC
TCAGATGATG CAAGGCCTTT ACAGGCTATT AAATCTTCGG TCCCATTTTC TCAAATGATC
GAAATTCGAG ACTTAAAGGC AAATAGCAAC TATGATGTAA AATCAAACCT TGAACAAATC
AACATTATGA TGCTTGATAA CACAGAGGTA GAGGTAAAAG CTAGTGTTGT TCTTAACGTT
ATAGCATTTG ATTGTTTAAC CGAATCCTTT ATGGTTGATT TCAAAGAAAA TCCTCTTGAC
TTAGCAGGGT TACAAGCAAT GCCAGGTATG GTTGGATATG TAGTAAAATC TGGTGATAGC
CTTTGGAAGA TAGCAAAGAG TTACCATACC ACAGTTGACG CTATCAAAGA TATTAATGAT
TTGGAATCAG AAGCTATCAG TGTAGGGGAT CATCTCTTAA TCGTTAAAGA ATTAGATCCG
AGCTTTGGAT GA
|
|---|
| Protein sequence | MELIKKNIHM NKLKCKSNLQ VTFDDDFNVP DSKPDISKLI KSQGEIKFND QKINNGKLYA
NGSLHFQVLY LSDETNRPIH SLSGQIPFDE VVNLNESCNH DTGTLKYEIE DLTASIINSR
KLSVKALVRL SVAVEDLYDE ESAVSVDAEP DVQSISKTID VTNMAVNKKD SYRFRDEVVL
PSGKSCISEV LYNNVELKNV DVRLLTDKFT AKGEISLFVL YIGEGEDSPM EYYEADLPFS
STIDCNGCSE DMTPDISLDI VGNNLSVKPD ADGEERVLDL ETILDVSIKI YEETQMQVLQ
DIYSPMREIT PVYKEAKYEN LLMRNNNRAR ISERIRLDED SAKLLQICHG NGTVKIDDIT
PVDNGLEVEG VIDLSILYIS SDDARPLQAI KSSVPFSQMI EIRDLKANSN YDVKSNLEQI
NIMMLDNTEV EVKASVVLNV IAFDCLTESF MVDFKENPLD LAGLQAMPGM VGYVVKSGDS
LWKIAKSYHT TVDAIKDIND LESEAISVGD HLLIVKELDP SFG
|
|---|
| |