Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cphy_3145 |
Symbol | |
ID | 5743231 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium phytofermentans ISDg |
Kingdom | Bacteria |
Replicon accession | NC_010001 |
Strand | + |
Start bp | 3839603 |
End bp | 3840919 |
Gene Length | 1317 bp |
Protein Length | 438 aa |
Translation table | 11 |
GC content | 39% |
IMG OID | 641294244 |
Product | integrase family protein |
Protein accession | YP_001560239 |
Protein GI | 160881271 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG4974] Site-specific recombinase XerD |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.00138908 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAACAAA TCAGTCCGGA AGAGAAAAAA CTTTTGCAAG AATACTTTAC CTGCGGTACA ATGAAGTCGG ATGAGCTGGA AAGTATAGTG AAAGAAATGA AGAAAGAAAA AGTTTTAAAG AAGCATCCAT ACAAGATTAC ACCGCCGATT AAGGACGGTG GACGCTGGAT GACTTATATC CTTGATACAG AGGTAAATAA AAGAGTCAAG ATTACTTCCT ACACCGAGGA TGGGATATAT CAGAAACTAT ATAAGATTTA TTTTCCAGTA AAGAAAGAAA CCTTGGAAAT TCTGTATCCC CTGTGGATTG AGAAACGTAA GGGCATGAAC CTGAGTAGCA GAACGATTCA AAGAAACCGA AATCATTGGG AGAAGTATTA CGAAGACACT AAAATTGTTA GAAAGTCCAT TGACAGAATA ACAGTCGAGG ATATCGAAGA TTTCTTTCAC AGTTGTATCA GTGATTATGA TATGACTAAG AAAGATTTGG ATAATATGAA GCTGATTTTC AAAGACCTGA TGAAATATGC CAAGAAAAAA GGATTAATCT TATCCAATCC ATATGATGAT ATCGAAATCA AATTGAATGG ATGTAAACCG CCGAATAATC CCAAGGATGA AAGCAGGGTC TATCTCCCAG AAGAAAAGGA GAAGCTCTTT CTTCAGCTGA ACAAGCGGTT AATGCAGATG CCTTTTGAGA CCGATGCCTA TGTTGTATTT CTTCTCTTCA AGCTTGGGCT TAGAATTGGA GAAGCTGTGG CGCTGAAATG GGTGGATATT GACTGGGAAG CCAGAGAAAT ACATATTCAT CGGATGGAAA GTCGTGTTGA AGATGAAAAC GGGAAACTCA AAGTAGCCAT CTGTGAGTAT ACGAAGAAGA AAAGCCCTGC TGGTGACCGG TATCTCCCTT TAAGTGATTA TGAAATTAAT CTGTTTCAGG CGGTTAAGCG TATCAATGAA GAAGCTGGAT ATTCAGATGG GGATTTTATT TTCTGCGATA AAGAAGGCAG AACCAAGATT CGCGAGGTCG ATAACTGTAT CCGTGCTCAG TGCAGACGTG CAGGAATTGA AGTGAAATCT GCTCATGATA TTCGCAGAAC GGTAGCATCA GAAATGAGAA GAAAAAAAGT GGAAATTGAA GACATTCAAT GGTATCTTGG TCACAATGAT GAAGCTACCA CTCGTACCTA CATACTGAAT AACCAAGGAA AGCAGAAGAC ATCAGAACAA ATTGTGAATG CTCTTTCAGA GATGAACGGA AGTGACGTAC TCATGGGTAC TCAAAACTCC GGAAATGAAA AATCGCCAGA AGCCTGA
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Protein sequence | MKQISPEEKK LLQEYFTCGT MKSDELESIV KEMKKEKVLK KHPYKITPPI KDGGRWMTYI LDTEVNKRVK ITSYTEDGIY QKLYKIYFPV KKETLEILYP LWIEKRKGMN LSSRTIQRNR NHWEKYYEDT KIVRKSIDRI TVEDIEDFFH SCISDYDMTK KDLDNMKLIF KDLMKYAKKK GLILSNPYDD IEIKLNGCKP PNNPKDESRV YLPEEKEKLF LQLNKRLMQM PFETDAYVVF LLFKLGLRIG EAVALKWVDI DWEAREIHIH RMESRVEDEN GKLKVAICEY TKKKSPAGDR YLPLSDYEIN LFQAVKRINE EAGYSDGDFI FCDKEGRTKI REVDNCIRAQ CRRAGIEVKS AHDIRRTVAS EMRRKKVEIE DIQWYLGHND EATTRTYILN NQGKQKTSEQ IVNALSEMNG SDVLMGTQNS GNEKSPEA
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