| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cphy_1122 |
|---|
| Symbol | |
|---|
| ID | 5741957 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium phytofermentans ISDg |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010001 |
|---|
| Strand | - |
|---|
| Start bp | 1414707 |
|---|
| End bp | 1415564 |
|---|
| Gene Length | 858 bp |
|---|
| Protein Length | 285 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 36% |
|---|
| IMG OID | 641292227 |
|---|
| Product | RpiR family transcriptional regulator |
|---|
| Protein accession | YP_001558239 |
|---|
| Protein GI | 160879271 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1737] Transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGAATA TCGAAATCAA AACTAGGAGT ATCATGGATT CTTTGAATAA TTCCGAAAGA
AAAGTAGCTA CCTACTTTTT AAACAATATC GAGAATATTT TCTCTATTCC AATTGCGCGT
CTTGCAGAAG AATCCGGAGT TAGCCAGGTA ACCTGGATTC GCTTTTGTAA AGCAATTGGA
TTTGACGGAT TAAAAGACTT AAAAAAGAGT CTTTTCATGG AATTAAACAG CTCCACATCG
GAAGGTATTG ATACTTCTGA CTTCTCCGAT ATTAAAAAAC ACAGTACACT GGAACAAATG
TGTAACACCA TTCGCAATAC AACACTTCAG GCAGTCGAAG ATACCATAAA GTTAATTGAT
TATGATACTT TAAAAAAAGT TGTCTCCATC TTATCAAAAG CTTCTTGTAT AAAATTATTT
GGCGTTGGTG CATCTGCTTT AGTAGCCGAT GATTTTTGTA AAAAATTACT TCGTATCAAT
AAAAATGTAA ATTTTAGCTA TGACATGCAC ACACAACTTG TTTATGGTGC AAATGCACGC
CCTGAAGATG TAGCGGTTAT CTTTTCTTAC TCTGGAACTA CCAAGGAAAT GCTTGAAATT
ATGGACTTAG CTAAAAAATC AAATTGTCCT ACCATAGTAA TCACGAAGTA TACCAAAAGT
CCTCTGGTTG CTAGTGCAGA CTACTCTATT TATATTTCTG CTCCTGAAAT TAATTATCGA
AGCGGAGCAA TGAGTAGTCG TATCGCACAG TTAACCATAG TTGACTTACT CTTTACCAGC
CTTGCCAATA AGAATTATAC CTCTGTTGAA AAGTATCTGG AAAAGAGTTC TGAAGTCTGT
CGTAGCCACA GGGTTTAA
|
|---|
| Protein sequence | MTNIEIKTRS IMDSLNNSER KVATYFLNNI ENIFSIPIAR LAEESGVSQV TWIRFCKAIG
FDGLKDLKKS LFMELNSSTS EGIDTSDFSD IKKHSTLEQM CNTIRNTTLQ AVEDTIKLID
YDTLKKVVSI LSKASCIKLF GVGASALVAD DFCKKLLRIN KNVNFSYDMH TQLVYGANAR
PEDVAVIFSY SGTTKEMLEI MDLAKKSNCP TIVITKYTKS PLVASADYSI YISAPEINYR
SGAMSSRIAQ LTIVDLLFTS LANKNYTSVE KYLEKSSEVC RSHRV
|
|---|
| |