| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cphy_0894 |
|---|
| Symbol | |
|---|
| ID | 5741766 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium phytofermentans ISDg |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010001 |
|---|
| Strand | - |
|---|
| Start bp | 1144874 |
|---|
| End bp | 1145986 |
|---|
| Gene Length | 1113 bp |
|---|
| Protein Length | 370 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 35% |
|---|
| IMG OID | 641292006 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_001558018 |
|---|
| Protein GI | 160879050 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0687] Spermidine/putrescine-binding periplasmic protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAT CTAAACTTTT TGTAGCGCTC CTTCTTGTAA GCTCACTGGT ATTCTCCGGT
TGTGGCTCCA AGGAAGACAA AGGTAATAAT ACTACTCCGG GAAATGGAGG GGAAAATCCA
GGAAACAGCA GTTCTTCCAA TAAAGGCGAA GTCTATGTTT ACAACTGGGG TGAATATATT
GACCCTGATG TTAAAAAAAT GTTTGAAGAC GAGACTGGTA TTAAATTAAT CTATCAGGAA
TTCGAATTAA ACGAGGACAT GTATCCTATC ATTAAAACCG GTGCAGTAAA TTATGATGTT
GTTTGCCCTT CTGATTATAT GATCGAGAAA ATGATTCAGG AAAACTTACT TGCTGAAATT
AATTTTGATA ATATTCCAAA CATTACAAAC ATCGATGAAA TGTATTTAAA AACAGCGGAA
AGTTTTGATC CAGGCAATAA ATACAGTGTT CCTTATTGTT GGGGTACGGT TGGTATTCTT
TATAACAAAA CTATGGTAGA CGGACCAGTT GATAGTTGGA GCGTATTATT TGATGAAAAG
TACAAAAATG ATATCTTAAT GATTGATAGC GTTCGTGATG CTTTCATGGT AGCATTAACC
TATCTTGGTT ACGACCAAAA CACAACAGAT GAGAAAGAAT TAGATGCTGC TAGAGATTTA
TTAAAAAAAC AGTATCCATT AGTTCAAGCA TACGTTGTTG ACCAGGTTCG TGACAAGATG
ATTGGTGAAG AGGCCGCTCT TGGTGTTATC TACTCTGGTG AAGCAATTTA CACAAAACGT
GAGAATGAAA ATCTTGAATA TGTGGTGCCA AAGGAAGGCT CTAACGTTTG GATTGATGGT
TGGGTAATTC CTAAGAATAG TAAGAATAAA GAAAATGCAG AAGCATGGAT TAACTTTATG
TGCCGTCCTG ACATTGCATT AAAGAACTTT GAATATATTA CTTATTCTAC ACCAAACAAA
GCAGCCAGAG AATTAATTGA AGACGAAGAC ATTAAGAACA GCCAAGTTGC TTTCCCTGAT
GCGTCTATAC TTGATCGCTG TAAGTCTTTC AAATATCTTG GCGAAGATAT GGAAAATATC
TATGTGAAAA AGTGGAATGA TGTAAAATAT TAA
|
|---|
| Protein sequence | MKKSKLFVAL LLVSSLVFSG CGSKEDKGNN TTPGNGGENP GNSSSSNKGE VYVYNWGEYI
DPDVKKMFED ETGIKLIYQE FELNEDMYPI IKTGAVNYDV VCPSDYMIEK MIQENLLAEI
NFDNIPNITN IDEMYLKTAE SFDPGNKYSV PYCWGTVGIL YNKTMVDGPV DSWSVLFDEK
YKNDILMIDS VRDAFMVALT YLGYDQNTTD EKELDAARDL LKKQYPLVQA YVVDQVRDKM
IGEEAALGVI YSGEAIYTKR ENENLEYVVP KEGSNVWIDG WVIPKNSKNK ENAEAWINFM
CRPDIALKNF EYITYSTPNK AARELIEDED IKNSQVAFPD ASILDRCKSF KYLGEDMENI
YVKKWNDVKY
|
|---|
| |