Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cphy_0879 |
Symbol | |
ID | 5741751 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium phytofermentans ISDg |
Kingdom | Bacteria |
Replicon accession | NC_010001 |
Strand | + |
Start bp | 1129734 |
End bp | 1130480 |
Gene Length | 747 bp |
Protein Length | 248 aa |
Translation table | 11 |
GC content | 36% |
IMG OID | 641291992 |
Product | tRNA pseudouridine synthase A |
Protein accession | YP_001558004 |
Protein GI | 160879036 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0101] Pseudouridylate synthase |
TIGRFAM ID | [TIGR00071] pseudouridylate synthase I |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGAAATA TTCAATTAAT AATAGAATAC GATGGCTCTC GATATGATGG CTGGCAAAAG CAGGCTGGAA ATCAGAAGTC TATAACGATT CAGGATAAGT TAGAAGATGT TTTAAATAAA ATGGAGAACG AAACCGTCAC GGTCATTGGA GCAGCTAGAA CCGAGGCCGG GGTACATGCT TACAAGCAGG TTGCTAGCTT TATGACAAAT TCAAAGCTAA AGGTTTATGA AATTAAGCAA TATCTGAATC GCTTTTTACC AAGAGATATT GCTGTCCTAG AGGCATTAGA AGTACCAGAG AGGTTCCATG CAAGTTTTAA CGCAGGATCC TTTGAGTATG AATATAAAAT ATCCATTGGA GAAGTACCTT CTGTATTTGA ACGCAAATAT AATTATTATT GCTTTAAACG TCCAGACATT GCTAAGATGA AGGAAGCAGC CAAATATCTA GTTGGGAAGC ATGATTTCAA AGCTTTTTCA GATAATAAAA GGATGAAAAA ATCTACCGAG AGAGAAATTT ATTCTTTAGA AATCTATGGG GATGAGAAAG AAATAGTAAT AACGGTTCAT GGTGATGATT TTTGGCCACA TATGGTACGA ATTATGGTAG GAACCTTACT TGACGTGGGT CTATCAAAAA TTGAACCAAT GGATATAAAA AGAATTTTAG AGAGCAAAGA CAGGGATAAA GCTGGCGAGA CCATAGAAGC GAAAGGTCTA TTTTTAACAG AAGTGCATTA TAAATAA
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Protein sequence | MRNIQLIIEY DGSRYDGWQK QAGNQKSITI QDKLEDVLNK MENETVTVIG AARTEAGVHA YKQVASFMTN SKLKVYEIKQ YLNRFLPRDI AVLEALEVPE RFHASFNAGS FEYEYKISIG EVPSVFERKY NYYCFKRPDI AKMKEAAKYL VGKHDFKAFS DNKRMKKSTE REIYSLEIYG DEKEIVITVH GDDFWPHMVR IMVGTLLDVG LSKIEPMDIK RILESKDRDK AGETIEAKGL FLTEVHYK
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