Gene Cphy_0410 details

Gene Information

• Locus tag: Cphy_0410
• Symbol: rho
• ID: 5745170
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Clostridium phytofermentans ISDg
• Kingdom: Bacteria
• Replicon accession: NC_010001
• Strand: +
• Start bp: 520544
• End bp: 522496
• Gene Length: 1953 bp
• Protein Length: 650 aa
• Translation table: 11
• GC content: 36%
• IMG OID: 641291522
• Product: transcription termination factor Rho
• Protein accession: YP_001557536
• Protein GI: 160878568
• COG category: [K] Transcription
• COG ID: [COG1158] Transcription termination factor
• TIGRFAM ID: [TIGR00767] transcription termination factor Rho

Plasmid Coverage information

• Num covering plasmid clones: 3
• Plasmid unclonability p-value: 0.000426411
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGTAATT TGTATGAAAC AAAGTCACTT TCTGAATTGC GTGATATTGC GAAAGAAAAG 
GGTTTGAAAA GTATTAGCGC ATTACGTAAG CAGGAACTGA TAGATGCTTT GAATGCATTG 
GAGAAAGGAC AAGGATCAGT TGCCTCCATA AATAAAAGTA CGGATGATAA ACCTATAAAG 
CTTGGAACAG AAGAAGTTAA ATTGGCAACA GAGGATACAA AGCAGAGTGT AGAGAATCGT 
GGTATGGAAT CTTCTCATAT GCAAGGAAAT CGAAATAACG TGATACGCAG GCTACCAGAG 
CAGAATCGTC AACATGAATT GGTAAAAGCA CCTGATCAAT CTAAGGGAAA TGATAATAGC 
CGAATGAGTG AGAGCTATCG CAGTAATGAA GGTCGGAACA TGGATAATCG TTTAGAGAAC 
AGAAACAACG ATAATAAAAA TAACGATAAT AGAAATAATG AAAATCGTAA TAATGAAAAT 
AGAAACTATG AAAATAGTAG AAATTATGAA AATAGAAGTA ATGAAAATAG AAACAATGAA 
AATAGAAACA ATGAAAATAG AAACAATGAA AATAGAAGCA ATGAGATGCT AAGAAATTAT 
GATAATAACC GCCGTACGAT GGATAATCGC AGACCAATGG ATAACCGCAG ATTAAATGAA 
AATCGCGGAT ATAATGAATC GGATCGTGTA GTCAGAATAA ATCCAACAGG GGATATTTCA 
GGTAATCAAG CTACTGAGTT AGGCTATAAT ACAACTTCCT CATCGGATCG TTTTCTTTCA 
CAAGCAAATC AACAGGAAGA AAAATTGCCA ATTGATATGG AACAATTGGA TTCTGGTGAA 
ACAAAAGAAG GAATTTTAGA GGTATTATCC GATGGATACG GATTTATTCG TTGTGATAAT 
TTTTTACCTG GGGAAAATGA TGTTTATGTT TCTCCGGCAC AGATTAGAAG ATTTAATTTA 
AAAACTGGTG ATATCATTGT AGGAAATACT AGAATACGTA ATCAAAACGA AAAGTTCAGC 
GCTCTTCTTT ATATCAAGCT TATTAATGGA TTACATCCTT CTGAAGCAGT AAAACGGAAG 
AAATTCGAAG ATTTAACACC GATCTTCCCA AATGAAAGAA TTCATCTTGA AACGCCTGGC 
TGTCAGGTAG CTATGCGAAT GGTAGACTTA ATTTCACCAA TTGGTAAGGG ACAAAGAGGT 
ATGATTGTAT CCCAGCCAAA AACAGGTAAG ACTACCTTGT TAAAACAAGT TGCTAAGGCT 
ATTACAAGAA ACCATCCTGA GATGCATTTA ATCATTTTAT TAATTGATGA GCGACCAGAA 
GAAGTTACCG ATATTAAAGA GTCTATAGAA GGTGGTAATG TAGAAGTAAT TTACTCCACT 
TTTGATGAAT TACCAGAGAA TCATAAGCGA GTTTCAGAGA TGGTTATAGA ACGTGCTAAG 
CGTCTGGTAG AGCATAAAAA AGATGTTGTT ATCTTATTAG ATAGTATCAC AAGACTTGCA 
AGAGCCTATA ACTTAACGGT ACAAGCTAGT GGACGTACCT TATCCGGTGG TCTTGACCCT 
GCAGCACTTC ACATGCCGAA AAAGTTTTTC GGAGCAGCAA GAAATATGAG AGAGGGCGGA 
AGCCTCACTA TTTTGGCAAC AGCGTTAGTT GAAACCGGTA GCCGTATGGA TGATGTTGTA 
TTTGAGGAAT TTAAGGGAAC CGGTAATATG GAACTTGTAT TGGATCGTAA TTTATCAGAG 
AAACGAATCT TCCCAGCAAT TGACCTTCCA AAGTCTAGTA CACGTCGTGA TGATTTATTA 
CTAAATTCCG CTGAGGTGGA AGCAAATTAT CTTATGAGGA AGGCGTTAAA CGGTCTTAAA 
TCAGAAGATG CAGTAGAACG AATTATTCAA ATGTTTGTTA ATACAAAAAA CAATGCAGAA 
TTTGTCGAAA TGATTAAGAA AACAAAGATA TAA 

 

Protein sequence

MSNLYETKSL SELRDIAKEK GLKSISALRK QELIDALNAL EKGQGSVASI NKSTDDKPIK 
LGTEEVKLAT EDTKQSVENR GMESSHMQGN RNNVIRRLPE QNRQHELVKA PDQSKGNDNS 
RMSESYRSNE GRNMDNRLEN RNNDNKNNDN RNNENRNNEN RNYENSRNYE NRSNENRNNE 
NRNNENRNNE NRSNEMLRNY DNNRRTMDNR RPMDNRRLNE NRGYNESDRV VRINPTGDIS 
GNQATELGYN TTSSSDRFLS QANQQEEKLP IDMEQLDSGE TKEGILEVLS DGYGFIRCDN 
FLPGENDVYV SPAQIRRFNL KTGDIIVGNT RIRNQNEKFS ALLYIKLING LHPSEAVKRK 
KFEDLTPIFP NERIHLETPG CQVAMRMVDL ISPIGKGQRG MIVSQPKTGK TTLLKQVAKA 
ITRNHPEMHL IILLIDERPE EVTDIKESIE GGNVEVIYST FDELPENHKR VSEMVIERAK 
RLVEHKKDVV ILLDSITRLA RAYNLTVQAS GRTLSGGLDP AALHMPKKFF GAARNMREGG 
SLTILATALV ETGSRMDDVV FEEFKGTGNM ELVLDRNLSE KRIFPAIDLP KSSTRRDDLL 
LNSAEVEANY LMRKALNGLK SEDAVERIIQ MFVNTKNNAE FVEMIKKTKI