Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cphamn1_0239 |
Symbol | |
ID | 6373894 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chlorobium phaeobacteroides BS1 |
Kingdom | Bacteria |
Replicon accession | NC_010831 |
Strand | + |
Start bp | 227817 |
End bp | 229937 |
Gene Length | 2121 bp |
Protein Length | 706 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 642682753 |
Product | alpha amylase catalytic region |
Protein accession | YP_001958689 |
Protein GI | 189499219 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0366] Glycosidases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.00519899 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGATTACT TGATGAGTGA AACAAAAAAT CAATTTTTTT CACATCATGC AACCACATCT TTTCCCTATT TTGCATCAGG TGTAAACCTC TATACCATTA TACATATGAA TCACACATTT TACCAGCATA AACCTGTAAT CAGCAGCCGG AAGTTCGACG GCAGGAGGCG TGTCATCATT GATCGTGTGT CTCCTGAGAT AGACGGCGGC CAATACCCTG TGAAGAGAAT CCCGGGGGAA ACGGTTCGGG TGGAGGCTGA TATTTTTACT GACGGTGCTG ACGTTATCAG CGCCGAGATT TGTTACCGGT CCGCATCGGC CCGTGCCTGG AAACGCTCTC CCATGATAGC GCTTTTCAAT GACGCCTGGG AAGGGGAGTT TGCCGTTGGC GATCCTGGGA ACTACGAGTT CACTATCGAA GCTTGGATCG ATCATTTTCA GACATGGCGG AGAGGGCTGA TAAAAAAAAT CGAGGCCGGT CAGGATGTTT CCCTTGCATT TCGTATTGGC GCGGGGATAG TTGAAAAAGC GGTTGAGCGA GCATCAAAAA GTGATGGCGC AAGGATGAGA GCCCTGATTT CCGTGATGAC TTCGGGGGAT GCCGAGGAAG CTGCTTCGAC GGCACTGTCC GACGAGCTTG ACGGGCTGAT GCAGTCCTGC CCGGACAAGG AGGCGGCCTC GCAGTATAAC AGGGTGCTCA AGGTCAGGGT TGACCAGAAA AAGGCCGGGT TCAGTACCTG GTATGAATTT TTCCCCCGCT CGTGGGCCGT GGAACCGGGC AGGCACGGAA CGTTCAGGGA GTGTAAACGT CTGCTTCCTC TCATTGCCCG GATGGGATTT GATGTTGTCT ATCTTCCTCC GATTTATCCG ATCGGTTCGA CAAAGCGTAA AGGAAAAAAC AACACTCTCG TCGCAGGGCC TGACGACCCC GGGAGCTGCT GGGCGATTGG AAGCGGTGAA GGGGGGCATA AGTCTGTCCA TCCTGAACTG GGCACCATAG AAGATTTCGG GGAATTTGTC CGGGAAGCAG AAGCCGAAGG CATCTCCGTG GCTCTGGATA TTGCGTTCCA GTGCTCCCCG GACCATCCCT ATGTGAAAGA GCACCCTCAA TGGTTCAAAT GGCGTCCTGA CGGTACGGTT CAGTTCGCGG AGAATCCGCC GAAAAGGTAT GAGGATATTC TTCCGCTTGA TTTCGAGACG GAGGACTGGA AAAATCTCTG GACCGAACTG AAAAGTGTTC TGCTTTTCTG GATTGAAAAA GGGGTCAGGA TCTTCAGGGT TGACAATCCG CACACCAAGG CTTTTCTTTT CTGGGACTGG GTGATTGACG AGATTACCGG AGAGTATCCC GATACCGTTT TTCTTGCTGA AGCGTTTACC CGTCCGAAGG TAATGGCAAG ACTTGCCAAA GGGGGGTTCA ATCAGTCGTA TACCTACTTT ACCTGGAGAA ACACCAAGCA CGACCTTCAA AAGTATCTCA CGGAACTGAC CACGTCGGAA GTGAAGGAGT ACATGAGGCC GAACTTCTGG CCGAATACGC CCGACATTCT GCATGAAGAG CTGCAGACCG GAAGTCGAGC TACCTTTCTT ACCCGAATGG CGCTTGCGGC AACCCTTTCT TCCAACTACG GGATGTACGC TCCTGCATAT GAGCTATGCG AGTACCTGCC TGTAAAGCCA GGCAAGGAGG AGTATCTCGA TTCGGAGAAG TACGAGATCA AGCAATGGGA TATGGACAGG CCTAGCAATA TCCGCGCCGA GATTACGGCG GTTAACCATA TCCGCAGGGA GAACGCCGCC CTGCAGCAGA CAAATAACAT AGAATTTGTA AGGGTTGACG CCGGTGAGGG GCGTGAACAT GATATGCTGA TGGGTTATGT GAAACGATCC GTGGATGACA GTAACATTAT CCTGACGGTT GTGAATCTCG ATCCTCAGAA CACGCATGCC GGATGGCTGC GTTTTCCACT TGAAGCGTTC AAGTTACCGC ATACCCATCA TTTCAGGGTT GAAGACCTTA TGAGCGGGCG CACCTTCGAG TGGGATGGCG AATGGAACTA CGTAGAGCTG AATCCTGAAC ATATGCCGGT ACACATTTTT AAAGTCAACC TGTTTTCTTA G
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Protein sequence | MDYLMSETKN QFFSHHATTS FPYFASGVNL YTIIHMNHTF YQHKPVISSR KFDGRRRVII DRVSPEIDGG QYPVKRIPGE TVRVEADIFT DGADVISAEI CYRSASARAW KRSPMIALFN DAWEGEFAVG DPGNYEFTIE AWIDHFQTWR RGLIKKIEAG QDVSLAFRIG AGIVEKAVER ASKSDGARMR ALISVMTSGD AEEAASTALS DELDGLMQSC PDKEAASQYN RVLKVRVDQK KAGFSTWYEF FPRSWAVEPG RHGTFRECKR LLPLIARMGF DVVYLPPIYP IGSTKRKGKN NTLVAGPDDP GSCWAIGSGE GGHKSVHPEL GTIEDFGEFV REAEAEGISV ALDIAFQCSP DHPYVKEHPQ WFKWRPDGTV QFAENPPKRY EDILPLDFET EDWKNLWTEL KSVLLFWIEK GVRIFRVDNP HTKAFLFWDW VIDEITGEYP DTVFLAEAFT RPKVMARLAK GGFNQSYTYF TWRNTKHDLQ KYLTELTTSE VKEYMRPNFW PNTPDILHEE LQTGSRATFL TRMALAATLS SNYGMYAPAY ELCEYLPVKP GKEEYLDSEK YEIKQWDMDR PSNIRAEITA VNHIRRENAA LQQTNNIEFV RVDAGEGREH DMLMGYVKRS VDDSNIILTV VNLDPQNTHA GWLRFPLEAF KLPHTHHFRV EDLMSGRTFE WDGEWNYVEL NPEHMPVHIF KVNLFS
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