Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Coch_2035 |
Symbol | |
ID | 8368496 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Capnocytophaga ochracea DSM 7271 |
Kingdom | Bacteria |
Replicon accession | NC_013162 |
Strand | + |
Start bp | 2436913 |
End bp | 2439366 |
Gene Length | 2454 bp |
Protein Length | 817 aa |
Translation table | 11 |
GC content | 38% |
IMG OID | 644984489 |
Product | transcriptional regulator, TrmB |
Protein accession | YP_003142140 |
Protein GI | 256820861 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1198] Primosomal protein N' (replication factor Y) - superfamily II helicase |
TIGRFAM ID | [TIGR00595] primosomal protein N' |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGTATTTCG TAGATGTAAT CTTGCCGCTT CCACTTTCTA AACTTTTTAC CTATCGTATT AATGAAGACG AAGCACATTT CCTACAAATG GGAATGCGCG TGGCTGTTCC ATTCGGTAAA TCGAAAGTAT ACACGGCTAT AGTACATCAT ATACATACGG TTGAGCCTTC TTATGACACT AAAGACATTG AATATATCTT AGATGAAACG CCTATTATTA CTCCCCAGCA AATAGAACAT TGGCAATGGA TAGCCGATTT CTATATGTGC ACTTTAGGGG AAGTACTAAA ATCAGCCTTG CCATCGGCTT TTTTATTAGA AAGTGAAACA ATAATTGAAA TTGCAGAAAA AGAATTAAAT TCAACACTCT TTACCGATGA CGAGTGGCAG GTATACGAAG CCTTACATTA CAAAACAGCC CTCAAAGGTA GTGAGGTGAG CAAGATAATC CCCAAAAACA AGGCACTGAA AGTGATGAAG AGCTTGGTAG AGAAAGGAGC TGCTCGCATT TCCGAAAGAA TATTTGAGAA ATATGTACCA AAACTCATCA AATACATTCG TTTATCTTCT GAATATCAAA CCGAAGAAGG CTTGCAAAAA GCCTTAGAAC TTTTGAAGCG GTCGGAAAAG CAAAAGAAGC TGATAATGGC TTATTTTAAT TATATCAACA GAGAAGTACT GCCTTTAAAA GCAGAAAAAT TATTAGAAGA AGCCAGTGTA TCGACAACAG TACTAAAATC AGTAATAGAA AAAGGCATTT TTGAAGAATA TTACTTACAG AAAGACCGTG TTAGCTTTGC TGATAGTGAT GTTTCGACAA AAAAGGTACT CAATGAGGTA CAAGAAGAAG CTCTCCATCA AATTCAGAAA CAGTTTCAGA CTAAAAACAC AGTTCTTTTA CAAGGGGTTA CCGCCTCTGG GAAGACTGAA ATTTACATTG AACTTATCAA CCAATATTTA AAGGCAGGAA AACAAGTACT CTATCTTCTT CCTGAAATCG GCTTGACGGT TCATCTTATC AACCGATTCA AGAATCACTT TGGCAAGAGC CTCTCAGTAT ATCATTCTAA ATATAGTACA AACGAACGGA TAGAAGTTTG GAATAATGTA CTAAATAATA GTCCCAAAGC GCAATTGATT GTAGGTGTTC GCTCATCAGT TTACTTGCCT TTCAGGCAAT TAGGGCTTGT AATCATTGAT GAGGAGCACG ATAATTCTTA CCGACAGTTT GAGCCAGCCC CTCGAATGCA AGCACGGGAT ACTGCTATTA TGTTGGCAAA CATTTTCAAA GCTAAAACTT TGCTGGGTTC GGCAACGCCC TCGTTGGAGA GTATGCACAA CGTGAAGACT GAAAAGTACG GATTTGTATA CTTATCAAAA CGCTACGCAG ATTTCCTTCC TCCTATTATC GAGCTTATCG ATATTAAGGA TAAGCACCAT CGCAAACGTA TGAACGGGCA TTTTTCCGAC GTTCTGATAA AGGAAATTAC GAATACTTTA TCGCAAGGGA GACAGGTGCT TCTCTTTCAA AACAGAAGAG GTTATGCTCC TATCGTGCAG TGTATGCAAT GTGGCACGGT GCCCCAATGT CCGCATTGCG ATGTAAGTCT CACTTTTCAT CAAAGCAGTA ATCAGTTGCG ATGCCATTAT TGCGGTTATG CAATTCCTAT GCCCAAAGCC TGTATAGCTT GTGGAAGTGT TGATTTAAGA ACAAAAGGCT TCGGAACAGA GCAAATTAGT AAAGAATTAG AAGTGCTTTT CCCGAACATA GCCATAGACA GAATGGATCA GGATACTACC AATGGTAAAT ATGGATATGA AAAAATATTA TCGAAGTTCG AGCAACAAGA AACGCAAATA TTAGTAGGTA CTCAAATGAT CACGAAGGGA TTAGATTTTG AAAACATAGG TCTAGTAGGC GTAATGAATG CCGATGCTCT CATTCATTCT CCTGACTACC GAGCTTACGA AAGGAGTTTT CAACTATTAT TGCAAGTATC AGGGCGTGCG GGAAGAAGTG CCCAACAAGG AAAAGTATTT ATACAAACCT ATAACCCACA GTACCCCGTA ATTCAGCAAG TATTACAAAA TGATTTCAGA GGAATGTATC AAAGTCAGAT AGAGGAACGC CAATCCTTTT TATATCCTCC TTTTGTACAA ATGATAAAAA TAACTCTCAA ACACAGTAAT TTTAACCAAG TAAATGAAAG TGCTGAGTGG TTTGCTAATA CACTTCGTGA AGTTTTTGCT TCTCAAAGAG GGATAGACGT CTTAGGTCCT GAATTCCCTC CTATTTCGCG TATCAGAAAT GAATATCTGA AAGATGTCTT GGTGAAAGTA CACCCCTCAG AAGTGTCTTT ACGTCACACT AAAGAGCATA TCAGGCGTAT TGAAACTAGT TTTCAAGCTA TCAGCAACTT TCGTGCTATT CGGGTAAGTT ATTTGGTGGA ATAA
|
Protein sequence | MYFVDVILPL PLSKLFTYRI NEDEAHFLQM GMRVAVPFGK SKVYTAIVHH IHTVEPSYDT KDIEYILDET PIITPQQIEH WQWIADFYMC TLGEVLKSAL PSAFLLESET IIEIAEKELN STLFTDDEWQ VYEALHYKTA LKGSEVSKII PKNKALKVMK SLVEKGAARI SERIFEKYVP KLIKYIRLSS EYQTEEGLQK ALELLKRSEK QKKLIMAYFN YINREVLPLK AEKLLEEASV STTVLKSVIE KGIFEEYYLQ KDRVSFADSD VSTKKVLNEV QEEALHQIQK QFQTKNTVLL QGVTASGKTE IYIELINQYL KAGKQVLYLL PEIGLTVHLI NRFKNHFGKS LSVYHSKYST NERIEVWNNV LNNSPKAQLI VGVRSSVYLP FRQLGLVIID EEHDNSYRQF EPAPRMQARD TAIMLANIFK AKTLLGSATP SLESMHNVKT EKYGFVYLSK RYADFLPPII ELIDIKDKHH RKRMNGHFSD VLIKEITNTL SQGRQVLLFQ NRRGYAPIVQ CMQCGTVPQC PHCDVSLTFH QSSNQLRCHY CGYAIPMPKA CIACGSVDLR TKGFGTEQIS KELEVLFPNI AIDRMDQDTT NGKYGYEKIL SKFEQQETQI LVGTQMITKG LDFENIGLVG VMNADALIHS PDYRAYERSF QLLLQVSGRA GRSAQQGKVF IQTYNPQYPV IQQVLQNDFR GMYQSQIEER QSFLYPPFVQ MIKITLKHSN FNQVNESAEW FANTLREVFA SQRGIDVLGP EFPPISRIRN EYLKDVLVKV HPSEVSLRHT KEHIRRIETS FQAISNFRAI RVSYLVE
|
| |