Gene Coch_1954 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCoch_1954 
Symbol 
ID8368412 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCapnocytophaga ochracea DSM 7271 
KingdomBacteria 
Replicon accessionNC_013162 
Strand+ 
Start bp2349481 
End bp2350116 
Gene Length636 bp 
Protein Length211 aa 
Translation table11 
GC content39% 
IMG OID644984405 
Productribonuclease H-related protein 
Protein accessionYP_003142059 
Protein GI256820780 
COG category[R] General function prediction only 
COG ID[COG3341] Predicted double-stranded RNA/RNA-DNA hybrid binding protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCAAAGA AGTATTATGT AGTATGGGAG GGACACCAAA CGGGGGTCTT TACCTCGTGG 
GCTGAATGTA AGAAGGCTGT TAATAATTTT CCAAACGCTA AATACAAAAG TTTTTCTACC 
GAAGAAATGG CACAAAAAGC CTATGCAGGG AATTATGAAA CGTACAAAGG TAAAAAGATA 
GAAGAGCCTG CACTTTCATC AGAAGCATTA AAACTTATTG GGAAGCCTAT TTTGCCTTCT 
ATTGCGGTAG ATGCTGCTTG TAGCGGTAAC CCTGGTATAA TGGAATATCG GGGGGTAGAT 
ACTGAAACAC AAGCCGAGAT TTTTAGGCTT TCACCTATGA AAGATGGCAC CAATAACATA 
GGGGAGTTTT TGGCTATAGT ACACGCTTTG GCTTTCTTAA AACAACGCAA CCTTACAATG 
CCTATCTATT CGGATAGTGA AATAGCAATG CGCTGGGTAC AACAAAAAGT ATGTAAAACT 
AAGCTTGGAA AGACAGCTGA TAATGCAAAA ATATTTGAAC TAATAACTCG TGCTGAAAAA 
TGGCTACAAG AAAATACTTA TCCTAATCGT ATTCTCAAAT GGGAAACCAA AGCGTGGGGC 
GAAAATCCTG CGGACTTTGG TAGAAAAGAC TCTTAA
 
Protein sequence
MAKKYYVVWE GHQTGVFTSW AECKKAVNNF PNAKYKSFST EEMAQKAYAG NYETYKGKKI 
EEPALSSEAL KLIGKPILPS IAVDAACSGN PGIMEYRGVD TETQAEIFRL SPMKDGTNNI 
GEFLAIVHAL AFLKQRNLTM PIYSDSEIAM RWVQQKVCKT KLGKTADNAK IFELITRAEK 
WLQENTYPNR ILKWETKAWG ENPADFGRKD S