| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Coch_1919 |
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| Symbol | |
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| ID | 8368377 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Capnocytophaga ochracea DSM 7271 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013162 |
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| Strand | + |
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| Start bp | 2305398 |
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| End bp | 2306747 |
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| Gene Length | 1350 bp |
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| Protein Length | 449 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 644984371 |
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| Product | Tetratricopeptide TPR_2 repeat protein |
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| Protein accession | YP_003142025 |
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| Protein GI | 256820746 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3063] Tfp pilus assembly protein PilF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0296562 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATGTTAC CAGAAGAAGA AAACTACGCG GTTACCAAAT TCGAATTAAT GCTCAAAGAG
AATAACATTC TCTTTTTCGA CGTTGATGAA TTTGAAGAAA TCGTAGAATA TTACTTAGAA
TACGGACGCA TTAGCAAAGC GAAACGTGCC TTGGAAATCG GTTTGTCACA ACACCCCGAT
GCTTCATCAC TTAAATTGCT AAATGCAGAA CAATTGGTGT TTGAAGACCG CTTAGAAGAG
GCTTCGGAAC TCCTCAATGA ACTGTTGCTC ATAGAACCTA TGAATGCCGA AGTGCACGTG
CAACAGGCTA ATCTGTACTC TAAAATGAAC AAACATCATC GCGCTATTGA GTTACTACAA
TACGCCATCA CACTTACCGA TGACGTTTCG AATATCTATG CCCTAATGGC AATGGAATAC
CTCTATACGG AGGATTATAC CAATGCCCAA AAGTATTTTA CCAAATGTTT GAAAGAAGAC
CCTCAGGATT ATACCGCCCT CCAACAGTTG GTGTTCTGCT ATGAGGTGTT GGGGGAAGTG
CAAGAGGCAA CCAACTTTCT AAACACTTAC TTAGACCAAA ATCCTTATTG TGAAGTTGCT
TGGTATTACC TCGGTAAGCT GTATTTATCC ATTACCGACC ATAAAAATGC CTTGCGTTGT
TTTGATTTTG CTATCATCAG CGACGATACT TTCACGGGGG CTTATTTCGA GAAAGCTCGC
GTGCTCGAAA TGATGGAAGA TTACGAAAAA GCTATCGAAA ACTATAAGAT TACTCTTACC
TTAGACGATC CTTCGGCTTT GGCTTATCTG CACATTGGGC GTTGTTATGA GAAAATGCGT
AACGATGCCA AGGCAGAAGA GTATTATTTC AGGGCTACTC ACGAAGATCC TCAGCTCGAC
AAAGCGTGGA TTACCTTAGC CGACTTCCAT TACTTGCGTC ATAATCACGC TAAGGCTCTA
AAATACATTA AAAAGGTACT TACTTTTGAA TCTAATGAGC CTTATTATTG GCGCCGTTAT
GCCGAGCTGA ATTATTATCA CTTTCAGAAC CTAAAAGAAG CAGAATACGG CTATCGGAAA
GCGGTACAAA ACGGCGATTA TTCCTATACT ACCCTCATCG AATGGATTGA CCTACTGTTG
CTCTCTAAAA AATACCGAGA AGCCTTATCT ATCATTGCCG ATATAGTGCA AATCTACCCG
CACGAGCTAG AGAATTACTA TCGTATTGCT TTGGCTTATT ACGGATTAGA CGATTTAGAG
GAAGCTACTC ATTATTACCA CTTAGGCTTA CAACACGCAC CCGAATGGCA GTCGTTTTTT
GAACACAAAT TCAACTTTAA AATACAATAG
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| Protein sequence | MMLPEEENYA VTKFELMLKE NNILFFDVDE FEEIVEYYLE YGRISKAKRA LEIGLSQHPD
ASSLKLLNAE QLVFEDRLEE ASELLNELLL IEPMNAEVHV QQANLYSKMN KHHRAIELLQ
YAITLTDDVS NIYALMAMEY LYTEDYTNAQ KYFTKCLKED PQDYTALQQL VFCYEVLGEV
QEATNFLNTY LDQNPYCEVA WYYLGKLYLS ITDHKNALRC FDFAIISDDT FTGAYFEKAR
VLEMMEDYEK AIENYKITLT LDDPSALAYL HIGRCYEKMR NDAKAEEYYF RATHEDPQLD
KAWITLADFH YLRHNHAKAL KYIKKVLTFE SNEPYYWRRY AELNYYHFQN LKEAEYGYRK
AVQNGDYSYT TLIEWIDLLL LSKKYREALS IIADIVQIYP HELENYYRIA LAYYGLDDLE
EATHYYHLGL QHAPEWQSFF EHKFNFKIQ
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