Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Coch_1904 |
Symbol | |
ID | 8368362 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Capnocytophaga ochracea DSM 7271 |
Kingdom | Bacteria |
Replicon accession | NC_013162 |
Strand | - |
Start bp | 2291798 |
End bp | 2293216 |
Gene Length | 1419 bp |
Protein Length | 472 aa |
Translation table | 11 |
GC content | 37% |
IMG OID | 644984356 |
Product | tRNA modification GTPase TrmE |
Protein accession | YP_003142010 |
Protein GI | 256820731 |
COG category | [R] General function prediction only |
COG ID | [COG0486] Predicted GTPase |
TIGRFAM ID | [TIGR00231] small GTP-binding protein domain [TIGR00450] tRNA modification GTPase TrmE |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAGAGAG AGAATTCGTT ATATATAAAT GATACGATTG TAGCTTTGGC AACTGCTTCA GGGGTCGGTG CTATTGCTGT AATTCGCCTA TCGGGAAAAG AAGCCATAAC CATAGCCGAC TCGGTGTTTA AGCCTCATAG TGGAAAATCT TTACTTGAAG CTCCGTCACA TACAGTTCAT TTAGGAACTC TCGAAAGTAA AGACCAAGTA ATCGACGAGT GTTTGGCTAC TATTTTCAAA GGAACTAAAT CTTATACAGG TGAGCCCGTA GTTGAGTTTT CGTGTCACGG AAGTAATTAT ATCGTAGAAG AAGTTATCAA GCTGTGCTTG GCAAAAGGAG CTCGTTTAGC CGATGCTGGG GAGTTTACCA AACGTGCTTT TCTCAATGGC AAATTAGCAC TCAATCAAGC GGAAGCCGTT GCCGATTTGA TTGCCTCCGA TAGTAAGGCT TCTCATCAGG TAGCATTACA GCAAATGCGA GGTGGGTTTA CTTCTGAGAT AGAAGGATTA CGACAAGAAT TATTGAACTT TACCTCATTA ATAGAACTTG AATTAGACTT TTCGGAAGAA GATGTAGAGT TCGCCGATAG AACTCAGTTT AAAACACTTT TGAGCACTAT TAAAACCATA GTTTTATCTC TCTTACAATC ATTTTCAGTA GGTAATGTAC TAAAAAATGG TATTCCTGTC GCTATTGTAG GCAAGCCTAA TGCAGGCAAA TCTACTTTAT TAAATGCCCT TCTGAACGAA GAACGCGCTA TTGTATCGGA TATTGCAGGT ACTACCCGCG ATACTATTGA AGAAACGCTT CATATAGGAG GTATTGCTTT TCGTTTTATT GATACCGCAG GAATTCGTGA TACTCAAGAC CAAATCGAAG CTATAGGTGT ACAAAAAGCT AAAGAAAAGA TAGAAAAAGC CTCTATTGTG CTCTACTTAT TCGATGTAAA AGATAGTTCT GCCCAAGAGA TTATTTCTTT TGTAAAAGAA AATTACCGCG AAGGAACTAA ATTTGTACTA TTACACAACA AAACTGACTT ATCAACAGAA AGTAATATAA CTCCTTTTGA TAATGAGATT TTACAATCCT TGCAAGGCTA TACTGATACA CTACTGAGAA TATCAGCTAA AGAAGGAAAC AATATTTTAG CCCTTAAAGA TTTTCTCTCT CACTATGCTC AAAGTCTTAA TAATACAGGT AAAGCAACTA TTATTACTAA TATCCGCCAC TACGAAGCTC TACACAATAC CTTACAAAGT ATTGAAAGAA TAGAACAAGG AATACAATTA CAACTTTCAG GTGACCTATT AGCTATCGAT ATCCGCGAAG CTCTCTATCA TTTAGGTTCT ATCACAGGAA CTGTAAGCAA TGATGAGGTC TTAGGAAACA TCTTTTCCCG CTTCTGTATC GGCAAATAA
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Protein sequence | MKRENSLYIN DTIVALATAS GVGAIAVIRL SGKEAITIAD SVFKPHSGKS LLEAPSHTVH LGTLESKDQV IDECLATIFK GTKSYTGEPV VEFSCHGSNY IVEEVIKLCL AKGARLADAG EFTKRAFLNG KLALNQAEAV ADLIASDSKA SHQVALQQMR GGFTSEIEGL RQELLNFTSL IELELDFSEE DVEFADRTQF KTLLSTIKTI VLSLLQSFSV GNVLKNGIPV AIVGKPNAGK STLLNALLNE ERAIVSDIAG TTRDTIEETL HIGGIAFRFI DTAGIRDTQD QIEAIGVQKA KEKIEKASIV LYLFDVKDSS AQEIISFVKE NYREGTKFVL LHNKTDLSTE SNITPFDNEI LQSLQGYTDT LLRISAKEGN NILALKDFLS HYAQSLNNTG KATIITNIRH YEALHNTLQS IERIEQGIQL QLSGDLLAID IREALYHLGS ITGTVSNDEV LGNIFSRFCI GK
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