Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Coch_1654 |
Symbol | |
ID | 8368100 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Capnocytophaga ochracea DSM 7271 |
Kingdom | Bacteria |
Replicon accession | NC_013162 |
Strand | - |
Start bp | 1978916 |
End bp | 1980874 |
Gene Length | 1959 bp |
Protein Length | 652 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 644984094 |
Product | ATP-dependent metalloprotease FtsH |
Protein accession | YP_003141760 |
Protein GI | 256820481 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG0465] ATP-dependent Zn proteases |
TIGRFAM ID | [TIGR01241] ATP-dependent metalloprotease FtsH |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCGGACA ATAAAAGCAA CGGGTCTCGT TTTTCAGCCT ATTGGTTATA TGCCATATTA CTGCTGATAC TTATAGGTTT TAATTATTAT TCAGGAGCCA GTTTTTGGTC ACAGCCCAAA GAGATTCCGC AATCTAAATT TGAGGAATAC CTTAGTAATG GCGATGTGTC TAAAATCATC ATCTTAAACC GTAAAGAAGC TAATGTATAT CTCACCCCCG ATGCTCTTAA AAAAGAAGAG CACAAAGAGG TAAAACCTAC GGGAAATACG TTTATGCAGG GTGCTAACGC AGGTGAAGTT CCCCAATACC GTTTTGAATT AGGTGATTTG AGTAATTTCG AAAACCGATT CGACCAAATT GTAAAAGATA ACAACCTCAG CACTACTCGT GAGAACAAAA CCGAGCAAAA CATCTTCGGC GATTTACTGT TCTCTATTTT GCCTTTTATA GTTATCATAG GCTTGTGGAT TTACATAATG CGCCGTATGG CAGGAGGCGG AGGAGCTGGT GGTATCTTCA GCATTGGCAA ATCTAAAGCG CGCGTATTCG ATGAAAAGAA AGAAACGCGT GTAACTTTTC AAGATGTAGC AGGCTTAGAG GGAGCAAAAG AAGAAGTACA AGAGATTGTA GACTTCCTCA AAAACCCCGA TAAATATACT TCATTAGGAG GTAAAATACC GCGTGGAGCC CTATTAGTAG GTCCTCCTGG TACAGGTAAA ACTCTTCTTG CGAAAGCTGT AGCAGGTGAA GCACAAGTAC CTTTCTTCTC ACTCTCTGGT TCTGACTTTG TAGAGATGTT CGTAGGGGTA GGTGCCTCTC GTGTGCGCGA CCTTTTCAAG CAAGCTAAAG AAAAGTCTCC TTGTATTATC TTTATTGATG AAATTGATGC TATAGGTCGT GCTCGTGGTA AAAATGTAAT GACGGGAGCT AATGATGAGC GTGAGAATAC TCTCAATCAA CTCCTTACCG AGATGGACGG TTTTGGTTCA CATACTAATG TTATCGTATT GGCAGCTACT AACCGCGCTG ATATCCTAGA TAAAGCACTA ATGCGCGCAG GACGTTTCGA CCGTCAGATT TATGTGGAGC TTCCTAACTT AAATGAGCGC AAACAGATAT TTGAAGTACA TTTGCGACCT ATCAAAACAG CAGAAACATT AGATATAGAC TTCTTAGCAA AACAGACCCC AGGATTCTCT GGCGCTGATA TTGCTAATGT ATGTAATGAA GCAGCCCTTA TTGCAGCACG CAAAGGTAAA ACAGCTGTAA GCAAACAAGA ATTCCTTGAT GCAGTGGATA GAATTGTAGG TGGTTTGGAG AAGAAAACTA AAATCCTTAC TCCCGAAGAA CGCAAGACAA TAGCCTTCCA CGAAGCAGGT CACGCTACTG TAAGTTGGCT CTTAGAGCAC GCCGCACCAC TTGTAAAAGT AACTATCGTG CCTCGCGGAC AGTCGTTAGG CGCGGCTTGG TATTTGCCAG AAGAACGCCA AATAGTGCGT ACTGAACAGA TACTCGATGA GATGTGCGCT GCCCTTGGCG GTAGAGCTGC AGAAAAAGTG ATATTCGATA AGATTTCTAC AGGTGCTCTC AGCGACCTTG AGAAGGTAAC CAAACAAGCG CGTGCAATGG TAACAATTTA TGGGCTTAAT GACAAGATAG GTAACCTTAC TTATTACGAT TCAGCCCAGT CCGATTATAG TTTTACCAAA CCTTATAGTG AGAAAACAGC GCACCTAATA GATGAAGAGA TTTCTAAGAT TATAGAAGAA CAATATCAGC GTGCTATTGA TATTCTCACC GAGAATAAGG ATAAGCTTAC TACTTTGGCA AACTTGCTCT TAGAACGTGA AGTAATCTTC CGCGAAGATC TTGAAAATAT CTTTGGTAAG CGCAAGTTTA AAGACCCACA CGATATTATT GAGGAGGAAG AAGATAAATC CTCAGAAGTT GTATCGTAA
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Protein sequence | MSDNKSNGSR FSAYWLYAIL LLILIGFNYY SGASFWSQPK EIPQSKFEEY LSNGDVSKII ILNRKEANVY LTPDALKKEE HKEVKPTGNT FMQGANAGEV PQYRFELGDL SNFENRFDQI VKDNNLSTTR ENKTEQNIFG DLLFSILPFI VIIGLWIYIM RRMAGGGGAG GIFSIGKSKA RVFDEKKETR VTFQDVAGLE GAKEEVQEIV DFLKNPDKYT SLGGKIPRGA LLVGPPGTGK TLLAKAVAGE AQVPFFSLSG SDFVEMFVGV GASRVRDLFK QAKEKSPCII FIDEIDAIGR ARGKNVMTGA NDERENTLNQ LLTEMDGFGS HTNVIVLAAT NRADILDKAL MRAGRFDRQI YVELPNLNER KQIFEVHLRP IKTAETLDID FLAKQTPGFS GADIANVCNE AALIAARKGK TAVSKQEFLD AVDRIVGGLE KKTKILTPEE RKTIAFHEAG HATVSWLLEH AAPLVKVTIV PRGQSLGAAW YLPEERQIVR TEQILDEMCA ALGGRAAEKV IFDKISTGAL SDLEKVTKQA RAMVTIYGLN DKIGNLTYYD SAQSDYSFTK PYSEKTAHLI DEEISKIIEE QYQRAIDILT ENKDKLTTLA NLLLEREVIF REDLENIFGK RKFKDPHDII EEEEDKSSEV VS
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