Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Coch_1343 |
Symbol | |
ID | 8367774 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Capnocytophaga ochracea DSM 7271 |
Kingdom | Bacteria |
Replicon accession | NC_013162 |
Strand | + |
Start bp | 1575817 |
End bp | 1578861 |
Gene Length | 3045 bp |
Protein Length | 1014 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 644983770 |
Product | TonB-dependent receptor plug |
Protein accession | YP_003141450 |
Protein GI | 256820171 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.253983 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAAGAA ATCTATTTTT ATCAGTTCTG TTGTTCTTAT TAGTGAGTTG GAGCTATGCG CAACAACGCA CTATCCGTGG AACTGTCAGC GATGCTACTA CCAAAGAGCC CCTAATGAGT GCTTCGGTAG TAATTAAAGG AACTAGTAAG GGTGTCAGTA CCGATATGAG CGGTAAGTAT ACCATAGAGG TATCGGTAGG GCAAACCTTA GAAGTCTCAT TTATGGGTTA TGTAACTCAA AATGTAAAAG TAACCGCCAA TACACCTTCA CCTTTGAATA TTGCTCTTGC CGAAGAGCAA AGAAAGTTAG ACGAAGTAGT GGTCGTAGGT TATGGCGTTA CTAAAGTACG TGATTTAGCA GGTGCTATTA CCTCCATCAA AACCAATGAT GTAAAAGCAG GGGTGGTAGC CGATATGTCA CAGATGTTAA AAGGTCGTGC CTCAGGAGTA CAAGTGCGCC AAAACTCACT CGAGCCTGGT GGTAATGTAT CTATCCGTGT ACGTGGTGCT TCTTCAGTAA GTGCCGATAA CGAACCACTC TACGTAATCG ATGGATTCCA AACAGATAAT ATGTCGCAAA TCAGTATAGA CGACATCGAA TCAATCGAAA TCTTAAAAGA TGCCTCTACT ACTGCTATTT ACGGAGCTCG TGGTGCTAAT GGGGTTATCC TTATTACTAC TAAAAAAGGT AAAGAAGGTA GCTTTAATGT AGAGTATTCT AACCAAACTT CTTATAAGAA TATGTATAAT CCTTGGGATT TGCTCGATGC TGGAGAAACC ATAGCACTTA CCCGTCGCTT ATATGAACAA ACCCAAGACG CCGCTTATGG CAAATGGACA GCTCAACAAG CTACCTATCG CGGTAAAGGT ACCGATTGGC TCAAAGAAAC CACTCACGAT GCCTTTACTG TATTGCATCA ACTTTCTGTA TCAGGTGGTA CTGACCGCTT ATCCGCTTTT ATGTCAGGTA ACTACCTTAC CGAACCTGGT ATTCTGCTCA ATACCGATTA TAATCGTTAT GGAGGACGCA TCAATTTGCA GTACAAGATA AGTCCGAAAG TAAGAGCGGG GGCTAATATG AGTTTTTCCA AATCTAAAAA GAAATTCTTA GATATGGGTA CAGTCTCTTC TGATAAAAAT ATTATGTATC GTATCTTTAA TTTGGAACCT TGGAAAAATA AAGAAGGTTT CGATGTGTTT GGAACTAAAG ACCGTCGTCC TGCTGTGTTC GAAGAAATGA GCGGAGCACA ACTCTATCGC CATTTTAATA CAATGTATGC AACCGCCTAT GCCGATATAG ATTTGTTGCC TTCACTTACT ATCAATGGTC GTTATACTTA TGCTTATGAC CATTTAAAAA CTGAAAAGTA TTATGACCGT TCTACTTCTA TAGGTCAGTC TTACAAAGGA CAAGCATTTC TCAGTCACGA AGAAAACGTA AAACACCAAA TAGAAGGTGT GGCTACTTAT CACCCTAAAA TGGAAGGTAA ACACGATGTA AAAGTAACCG CAGGTACTTC CTATATTTAT CAAAGAGGTA AAGGAGATGA AGTGCAAGCC TATGGTTTTG CTTCCGATGT ATTCTCTTTC AAAAATATTG GAGCTGCCCA ACATTTAGAT TGGATAGGTT CAGGTGAATC CTCAATCAAA AAAGCTTCTG TTTTCGGTCG TGCCGAATAC ATCTTCAATA ATCGTTATAT TATCAACGCT TCAGTTCGTG CCGATGGTTC ATCAGTGTTC GGAGCTGACT ATCGTTGGGG TATATTTCCT GCGGGATCTA TCGCTTGGCA CTTAGGAGAA GAAGAGTTTA TGAAATTTGC TAAACCTCTT TTCTCTCGTA TCAAATTGCG CACTAGCTAT GGGCTTAGTG GTAACGATGG TATCCGTTTT GGTTTGTCAC AATACCAATA CTCTGTACGC GATGTGTATA TTGGTAATGA CGTGAACTCT AAAGGTATGT ATCCTTCTAA TCCCTACAAT CCAAAACTCC GTTGGGAAAC CACTGCACAA TGGAATGCCG GTATCGATTT AGTGGTTGGT AGAGTAGAAG CCAGCTTCGA TTATTATATC AAACGCACTC ACGACTTGTT AAACCCTGAC CCTATTCACC CTTCAGGAGG TTTCCCTAAC TATGTGAATG ACGGTCGCCG TTTTGAGTAT ACCGCAATGA TGGTAAACGA TGGTGAGATT GAAAACCGAG GCTTTGAAGT GGCTATCAAA TCTACCAATA TCAATAAAAA CGATTTTGTG TGGACTACAG CATTTAACTT CTCTCATAAC CGTAGTGAGG TATTGAAACT CAACGATGGA AAACCACGTT TTCAGTATAT ACGTCCTCAC GGTTCTTATG ACGAAAAAGA ATATATGATG CTCAAAGAAG GTGAACCTCT TAGTGCTATC TATGGTTATG AGTTCGATGG TATCCTTCAA GAAGGTGAAA CTTATGCACC ACAGCCTAAC TCAGCACCTG GTGACCCTAA GTTTAAAGAC CTCAATGGTG ATGGTAAAAT AGACGAAAAA GACCGTACTG TATTGGGTAC TGGTATCCCT AAAACTATCA TAGGTCTTAA CAATAGTTTT ACCTATAAAG GGTTTGACTT CTCTTTCTTC TTTGAAGCCT CATTAGGAGC CAAGATGCTT AACTTAACTC GTATTTATTT GGAAGATAAT AACCGCCTTT CGGATTCAGC TGACCGTTGG ACAAAAGCTC ACGCTTCTAA CAGTGTGCCT CGTAATGGTT ATCAAAAAAC AGCCAAATTG CAATATGGTT CTTATGTAAA CTCTCGTTTT GTAGAAGATG CCGATTTCGT AAAATTGCGC AATGTTGAGT TAGGATATAC CTTCACAGGC AGTCAATGGA ATATGAAAAC TCTTAAAACA ATGCGTATGT TTGTAGGAGC TCAAAATTTG CTTACCTTCA CTAAATACCA AGGTTTCGAC CCCGATATCA GTACCAATGG TAGTAGTGCT ATTGCACAAG GTTTGGATTT GAACTCTTAT CCTGCTTACA GAACCATTAA CTTTGGAGTG AAATTAACTT TTTAA
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Protein sequence | MKRNLFLSVL LFLLVSWSYA QQRTIRGTVS DATTKEPLMS ASVVIKGTSK GVSTDMSGKY TIEVSVGQTL EVSFMGYVTQ NVKVTANTPS PLNIALAEEQ RKLDEVVVVG YGVTKVRDLA GAITSIKTND VKAGVVADMS QMLKGRASGV QVRQNSLEPG GNVSIRVRGA SSVSADNEPL YVIDGFQTDN MSQISIDDIE SIEILKDAST TAIYGARGAN GVILITTKKG KEGSFNVEYS NQTSYKNMYN PWDLLDAGET IALTRRLYEQ TQDAAYGKWT AQQATYRGKG TDWLKETTHD AFTVLHQLSV SGGTDRLSAF MSGNYLTEPG ILLNTDYNRY GGRINLQYKI SPKVRAGANM SFSKSKKKFL DMGTVSSDKN IMYRIFNLEP WKNKEGFDVF GTKDRRPAVF EEMSGAQLYR HFNTMYATAY ADIDLLPSLT INGRYTYAYD HLKTEKYYDR STSIGQSYKG QAFLSHEENV KHQIEGVATY HPKMEGKHDV KVTAGTSYIY QRGKGDEVQA YGFASDVFSF KNIGAAQHLD WIGSGESSIK KASVFGRAEY IFNNRYIINA SVRADGSSVF GADYRWGIFP AGSIAWHLGE EEFMKFAKPL FSRIKLRTSY GLSGNDGIRF GLSQYQYSVR DVYIGNDVNS KGMYPSNPYN PKLRWETTAQ WNAGIDLVVG RVEASFDYYI KRTHDLLNPD PIHPSGGFPN YVNDGRRFEY TAMMVNDGEI ENRGFEVAIK STNINKNDFV WTTAFNFSHN RSEVLKLNDG KPRFQYIRPH GSYDEKEYMM LKEGEPLSAI YGYEFDGILQ EGETYAPQPN SAPGDPKFKD LNGDGKIDEK DRTVLGTGIP KTIIGLNNSF TYKGFDFSFF FEASLGAKML NLTRIYLEDN NRLSDSADRW TKAHASNSVP RNGYQKTAKL QYGSYVNSRF VEDADFVKLR NVELGYTFTG SQWNMKTLKT MRMFVGAQNL LTFTKYQGFD PDISTNGSSA IAQGLDLNSY PAYRTINFGV KLTF
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