| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Coch_1186 |
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| Symbol | |
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| ID | 8367608 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Capnocytophaga ochracea DSM 7271 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013162 |
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| Strand | + |
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| Start bp | 1393026 |
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| End bp | 1395515 |
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| Gene Length | 2490 bp |
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| Protein Length | 829 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 644983610 |
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| Product | Tetratricopeptide domain protein |
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| Protein accession | YP_003141298 |
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| Protein GI | 256820019 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3307] Lipid A core - O-antigen ligase and related enzymes |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0301041 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAACCCA ACAAGAAGAA AACACCCAGC AAGAATCCTA TTAAACCTAC CCCCACAGTG
AGTGAGGAAG GGAATTCGAG TATGAAGCTT TTGGCGAGTG TCTTGCTCAT TGCCTATGGC
TATGTAACGG TACTTACCCC TAACTGGATG GCATTCGACT CCAATGCTAC AAAGTTTTAC
ACCTTTGCTA TTCTGAACTT GATAGTAGTA GGGCTTGTGT TTTTTATTAA AGAATTCAGA
GAACGCACAC AATTACTGTT TGGCTTTTTT ACCAATAAAA TAGGGATTGC TTACTGCCTG
ATAATGGTAT TGGCATTGTT CTCGTTTACC AAAGCTATTG ATATAGAAGA AGCGATTTTG
CACTTCTTTA AGATATTTAC AGCTTTCTCA GCTGCTTGGA TGGTATCGGC TTTGGTAATT
TACAACAAAA AGAGTTTAGT ACATTTGGCA GTTGCGATGA CAATTCTTTT GTGTTATGAC
TTTTTGGTAA CCCTCGACGG GGTAAAAGGC ATCATCAAGG CTATTAGTGC CGATTACAAT
ATCAAAGGCT CGTATTCTAA CAAGAATATT TTGGCTTCGG CTATGTTTAT TAAGATACCT
TTTGCTATCT GGTTGTTTTA TTTTCAGAAA AACACCTTGC GTATCATCGG AGGGATAGGT
GTTTTAGTCG GTACTTTGGC AATCTTCTTT ATGAGTACCC GTGCTTTCTA TTTAGCAACT
ATTCTTACAA CGCTTATCTT CATCACGTAT GGTGCTATCG ACTATTTTAT CTTAAAACGC
CGTGAAACGG GCGTAAAAGT ACTGATGCAC GTAGGCTTGG TAGTTCTTGC TTTTGGTATT
TTCTCGTTTG TACAGAACTA TCTCTACCCT CAACAAGTGC GACAAAGCAC CAGTTTCGGG
GCTCGTTTAG CTGAGGTAGC TAACCAAGAG AATACCAGTA ACAACTTGCG TAAAACTGCT
TGGGTGATTA CCACTACTGA TATGATTCCG AATGACCCAC TGTTGGGTGT AGGCATTGGT
AACTGGAAGG TACGCTTCTT ACAGTATGAG AATTCTTATA GTCCGCATTA TATTTATATG
TATAAGAACC ATAACGACTT TTTGGAGCTC ACCGCCGAAG CGGGAATCTT TGCAGGGTTG
GCGTTCTTGG CTATTTTCCT CTTGGCAGCT TATTATTTCC TAAGAGGCAC TTATAAAAAC
AAGAATCCTG AGCAAGAACA GTGGTTTTTC TTACCATTGT TTGGTCTCTT TGCTTATTCG
TTCGATGCGT TCTTTAACTT TCCTCAAGAC CGTCCCGAAA TTCAAGCCCT CTTTGGTATT
TATGTAGGGA TAGCAGTAGG CTTAGCAGTA TTGTATTTCA GTAAGAAAAA AGGAGAAGAG
CGCAAATTGC CAATGAGTGT TGTAGGTTTT ATAGGAGCAG TAGCCCTGGT GGCAATGGTT
TTGAATGTAG TAGTAGAGCG TATGTACTTT GATTCTTCTA AAATACAACG TATGGTAAAA
GAAGAGCAAC AAGGGGTGCG TCCTACTAAA TCACCTTCGG ATTACCTGAT ACGCAACTAT
CCTCGTATTC CAAATCTCAC GGCAGTGGCT GAGCCCGTGG ATGTAGAAAA GGCGCGCTAC
TTGATAGACG AAAAGAAATT CGATGAGGCA CGTAAAGTAT TGGCTTCCAT TCATTACCAC
CCTTATGATG CGCGCCCTGA GTATTTTACT GCTGTATCAT ACTTTATGGA AGAGAACAAA
AACAACGATA GTATTTATAA ATATGCTCAT AAAGCCCGAA TGATAAAGCC AAATTTCTTC
GGTAACCTAA ATTTAGAGAC CTTTGCGCTG AACAATATGG GTAAAGAACA AGAATCGATT
CACTTGCTCA AACAGTATTT AGGCTTGGAG AAAGACAGTG TGCAGAAACC ACAACCTAAG
TGGAAAACTA TACTGAAAAA CCGTTTCCAC GTAGATGTAG ATAGAGACGC TCTTCGCGGT
AATCGCAGTG AGGTACAAGC GTGGAACTCT TTGGCTTATC TGCAAGAGAA AAATAACTTA
ATAGCTGATG CTCGTGCTAC CTTAGATAGT GCCATTGTGT ATTTGCCCGA TAATAAAGAT
ATAATTAATA ACCGCAACAA GATTATCTCG CGTATGCAGG TAGAACAGTT TGCCCCTCTT
TACACTCAGG CAATGCAACT CTATTTGCAG CAACGTTATG CTGAAGCAAT TCCTATATTT
ACGAAGTTCT TGGAGAAAGT ACCTGCTCAT ATAGACGGGC TCAGGTATCG TGCTATTAGT
TACTACAACA CGCAGCAATA CCAAAAGGCT ATTAATGATA TGGCTGAAAT GGAGAGCTTA
GGAGTGCCCG TAGATGCTGT ACTGAATAAT TATCGCGCCT CTTGCTACTA TATGTTGGGC
GACAAAGCAA ACGCCAAAGT CTTTTTCCAA AAAGCCGCTA GCGAGGGCAA TGCCGATGCT
CAACGCAACT TAAATACCCT CAGTTTTTAA
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| Protein sequence | MKPNKKKTPS KNPIKPTPTV SEEGNSSMKL LASVLLIAYG YVTVLTPNWM AFDSNATKFY
TFAILNLIVV GLVFFIKEFR ERTQLLFGFF TNKIGIAYCL IMVLALFSFT KAIDIEEAIL
HFFKIFTAFS AAWMVSALVI YNKKSLVHLA VAMTILLCYD FLVTLDGVKG IIKAISADYN
IKGSYSNKNI LASAMFIKIP FAIWLFYFQK NTLRIIGGIG VLVGTLAIFF MSTRAFYLAT
ILTTLIFITY GAIDYFILKR RETGVKVLMH VGLVVLAFGI FSFVQNYLYP QQVRQSTSFG
ARLAEVANQE NTSNNLRKTA WVITTTDMIP NDPLLGVGIG NWKVRFLQYE NSYSPHYIYM
YKNHNDFLEL TAEAGIFAGL AFLAIFLLAA YYFLRGTYKN KNPEQEQWFF LPLFGLFAYS
FDAFFNFPQD RPEIQALFGI YVGIAVGLAV LYFSKKKGEE RKLPMSVVGF IGAVALVAMV
LNVVVERMYF DSSKIQRMVK EEQQGVRPTK SPSDYLIRNY PRIPNLTAVA EPVDVEKARY
LIDEKKFDEA RKVLASIHYH PYDARPEYFT AVSYFMEENK NNDSIYKYAH KARMIKPNFF
GNLNLETFAL NNMGKEQESI HLLKQYLGLE KDSVQKPQPK WKTILKNRFH VDVDRDALRG
NRSEVQAWNS LAYLQEKNNL IADARATLDS AIVYLPDNKD IINNRNKIIS RMQVEQFAPL
YTQAMQLYLQ QRYAEAIPIF TKFLEKVPAH IDGLRYRAIS YYNTQQYQKA INDMAEMESL
GVPVDAVLNN YRASCYYMLG DKANAKVFFQ KAASEGNADA QRNLNTLSF
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