Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Coch_1162 |
Symbol | rplF |
ID | 8367584 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Capnocytophaga ochracea DSM 7271 |
Kingdom | Bacteria |
Replicon accession | NC_013162 |
Strand | + |
Start bp | 1378037 |
End bp | 1378579 |
Gene Length | 543 bp |
Protein Length | 180 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 644983588 |
Product | 50S ribosomal protein L6 |
Protein accession | YP_003141276 |
Protein GI | 256819997 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0097] Ribosomal protein L6P/L9E |
TIGRFAM ID | [TIGR03654] ribosomal protein L6, bacterial type |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.00000404659 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCAAGAA TAGGTAAAGC ACCCATCAAT ATTCCCGCAG GCGTTACCGT TACTATCAAA GATAACGTTG TAACCGTAAA GGGGAAATTA GGCGAATTAA CCCAAGAGGT TAAAGACATT GCTGTAAAGC AAGAAGATGG ACATTTAGTG TTTGAAACTA AAGATACCAC TAAAGACCAA AACGCTAAAC ACGGCCTATA CCGTGCCTTG GTAAACAATA TGGTCGTAGG TGTTTCTGAA GGATTCACTA AAGAATTAGA GTTAGTAGGG GTTGGATACC GTGCAGCTAA CCAAGGTCAA AAGTTAGACT TAGCCCTCGG TTTCTCTCAC AACATCATTC TCGAATTGCC AAAAGAAATT AAACTCGAAA CAATCAACGA GAAAGGTAAA AACCCTATCA TTAAATTAAC TTCTCACGAC AAACAACTAC TCGGGCAAGT AGCGGCTAAA ATCCGTAGCT TCCGCAAACC TGAACCTTAC AAAGGTAAAG GTGTCAAATT CGTAGGCGAA GTGTTGAGAA GAAAAGCAGG TAAATCAGCT TAA
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Protein sequence | MSRIGKAPIN IPAGVTVTIK DNVVTVKGKL GELTQEVKDI AVKQEDGHLV FETKDTTKDQ NAKHGLYRAL VNNMVVGVSE GFTKELELVG VGYRAANQGQ KLDLALGFSH NIILELPKEI KLETINEKGK NPIIKLTSHD KQLLGQVAAK IRSFRKPEPY KGKGVKFVGE VLRRKAGKSA
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