| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Coch_1159 |
|---|
| Symbol | rplE |
|---|
| ID | 8367581 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Capnocytophaga ochracea DSM 7271 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013162 |
|---|
| Strand | + |
|---|
| Start bp | 1376770 |
|---|
| End bp | 1377321 |
|---|
| Gene Length | 552 bp |
|---|
| Protein Length | 183 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 644983585 |
|---|
| Product | 50S ribosomal protein L5 |
|---|
| Protein accession | YP_003141273 |
|---|
| Protein GI | 256819994 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0094] Ribosomal protein L5 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.000000883476 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTTACG TACCTAGATT AAAACAAGAA TACAAAGAGC GCATCGTTGC GGCTCTAAAA
GAAGAATTTG GCTATAAAAA TGTAATGCAG GTTCCTAAAC TTGAAAAAAT AGTTGTGAGC
CGTGGTGTTG GTTCTGCAGT AGCCGATAAA AAACAAATCG ACTATGCTGT AGACGAACTT
ACCAAAATTA CTGGTCAGAA AGCTGTTGCC ACTTATTCTA AAAAGGACGT AGCTTCTTTC
AAACTCCGTA AAGGTATGGC TATCGGTGCC AAAGTTACCC TTCGTGGCGA AAGAATGTAT
GAGTTCTTAG ACCGCCTTAT CACTACAGCT CTTCCTCGTG TAAGAGACTT CCAAGGCGTG
AAAGCAAATG GCTTCGATGG TAGAGGTAAC TACAACTTAG GCGTTACCGA ACAAATTATA
TTCCCTGAAA TCGACATTGA TAAAATCAAC AAGATCGCAG GTATGGATAT TACCTTCGTT
ACTTCAGCTC ACACTGATAA AGAAGCTAAA TCATTATTAA GCGAATTAGG ATTACCTTTT
AAAAAGAACT AA
|
|---|
| Protein sequence | MAYVPRLKQE YKERIVAALK EEFGYKNVMQ VPKLEKIVVS RGVGSAVADK KQIDYAVDEL
TKITGQKAVA TYSKKDVASF KLRKGMAIGA KVTLRGERMY EFLDRLITTA LPRVRDFQGV
KANGFDGRGN YNLGVTEQII FPEIDIDKIN KIAGMDITFV TSAHTDKEAK SLLSELGLPF
KKN
|
|---|
| |