| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Coch_1130 |
|---|
| Symbol | |
|---|
| ID | 8367552 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Capnocytophaga ochracea DSM 7271 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013162 |
|---|
| Strand | + |
|---|
| Start bp | 1344742 |
|---|
| End bp | 1346286 |
|---|
| Gene Length | 1545 bp |
|---|
| Protein Length | 514 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 644983557 |
|---|
| Product | PKD domain containing protein |
|---|
| Protein accession | YP_003141245 |
|---|
| Protein GI | 256819966 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0181278 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGCAC TCAAAAACCT AATAGCACTA CTGCTCCTCA TTGGAATGGT AGCTTGCGAA
AAAGATAAGG ACGACCTCAG TTTCGTCCAA AATGCCACTG CTCCTACTGA TGTCTCAGCT
AAATTTCAGG TGAGCACCGA TAACACAGGA ACAGTAACCA TCACTCCTTT AGCTACGGGG
GTAGCCACTT ATAAGGTCTA CTTTGGCGAT AGCACTGCAA CCCCCACTGT GGTAAAAGCA
GGTGGTTCGG TAACACACAC TTATGCTGAA GGTAGTTACC AAGTGAAAAT AGTAGCTGTG
AACATCGCTG GCAAGGAGGC CGAAGCAACT TTGCCTTTAG AGGTGTCGTT CCGCGCTCCT
GAGAATGTAG AAGTAACTGT CGCTAACGAC CAAGCGGTTT CTAAGAAAGT GAATGTAACT
GCTAAAGCCG ATTTTGCAAT TACCTATGAT GTGTATTTCG GTGAGAGTAG CGACGAAAAA
CCGGTGTCTG GCAATATAGG TGAAGTTGTT TCACACATTT ATAGGCAAAC AGGTACTTAT
ACCCTTACGA TAGAGGTGAA AGGTGCTGGC AAACAAACTA CCAAAGTACA AAAATCGGTA
CGAGTAATTG CCTTGCAACA GCCAACTACT GCGGCTCCTC AACCTCCAAT CCGCAAAGCA
CAAGAGGTCG TTTCGCTTTT CAGCGGACGA TATACCAATG TGGCAGGTAC CGATTTCAAC
CCTAATTGGG GGCAAGCCAC TGCCTATAAT CTCTTTAAGT TGGGCACCGA TGAAATCTTG
CAATACGCTC ACCTCAATTA TCAAGGTATC CAATTTGCCC GAGAAATCGA CCTATCAGCG
ATGGAGTTCT TGCATTTAGA TGTTTGGACT GCCGATGCTA CCGCTTTAGA TATCTATTTG
ATTAGCAAAA GCACAGGCGC TGACGGTGAG AAGTTCGTCA AAAAGACCCT CACTGCCGAT
AAGTGGACAA GCATCGATAT TCCACTAAAC GACTACACCA AACAAGGATT TGTAATCACC
GATGTACACC AAATAAAATT GGTAGGACAA GGTACCGTAT TTATTGATAA CTTGTATTTC
TACAAAAAAT CGAATACCGT GATAATCGAA AACTTTGAAG GTACAGCTCC CGAATTTACT
ACCTTTGGTG ATATGGCAAA TGTAGAAGTA GTTGCCAACC CTAAAACAGT AGGCAATACA
TCTACCAAAG TAGTGAAAAT GGTGCGTACC AAAGGTAGCC AAACGTGGGC AGGTGCGTTC
TTCACTTCCG AAAATTTGGA TATGAACGCT CATAAAATCC TTAAATTGAA AGCGCTATCA
CCTAAAACAG GTATTGTTGT AAAAGTAAAA TTAGAGAATG CTGCGGGTAA TATTTCTAAA
GAAGTAGATG CTCGTATCAC CAAAAAGAAT ACTTGGGAAG AACTTTCTTT TGATTTTACT
GGCATTGATA CCAGCACTAC CTATACCAAA GTAGTTGTTT TCTTCGACTT TGGTGAAAAA
GGGGATGATA CCACTTATTA CTATGATGAA ATAACACTTA ATTAA
|
|---|
| Protein sequence | MKALKNLIAL LLLIGMVACE KDKDDLSFVQ NATAPTDVSA KFQVSTDNTG TVTITPLATG
VATYKVYFGD STATPTVVKA GGSVTHTYAE GSYQVKIVAV NIAGKEAEAT LPLEVSFRAP
ENVEVTVAND QAVSKKVNVT AKADFAITYD VYFGESSDEK PVSGNIGEVV SHIYRQTGTY
TLTIEVKGAG KQTTKVQKSV RVIALQQPTT AAPQPPIRKA QEVVSLFSGR YTNVAGTDFN
PNWGQATAYN LFKLGTDEIL QYAHLNYQGI QFAREIDLSA MEFLHLDVWT ADATALDIYL
ISKSTGADGE KFVKKTLTAD KWTSIDIPLN DYTKQGFVIT DVHQIKLVGQ GTVFIDNLYF
YKKSNTVIIE NFEGTAPEFT TFGDMANVEV VANPKTVGNT STKVVKMVRT KGSQTWAGAF
FTSENLDMNA HKILKLKALS PKTGIVVKVK LENAAGNISK EVDARITKKN TWEELSFDFT
GIDTSTTYTK VVVFFDFGEK GDDTTYYYDE ITLN
|
|---|
| |