| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Coch_1047 |
|---|
| Symbol | |
|---|
| ID | 8367469 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Capnocytophaga ochracea DSM 7271 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013162 |
|---|
| Strand | + |
|---|
| Start bp | 1245530 |
|---|
| End bp | 1247038 |
|---|
| Gene Length | 1509 bp |
|---|
| Protein Length | 502 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 644983475 |
|---|
| Product | Histidine ammonia-lyase |
|---|
| Protein accession | YP_003141163 |
|---|
| Protein GI | 256819884 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2986] Histidine ammonia-lyase |
|---|
| TIGRFAM ID | [TIGR01225] histidine ammonia-lyase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAACAT TGCGTACTTA CAGCGATTTT AAAGATATCG TTTTTGATAA GAAAGAAGTG
GCTATTAGCA AAGAAACTAA AGCCCTCATT GAAGAGAGTT ACGCTTTCTT AAAAGACTTT
GCAGAGAACA AAATCATCTA TGGCGTGAAT ACGGGCTTTG GACCGATGGC GCAATATCGC
ATTGAAAAAG AAGACCAATT GCAGTTGCAA TACAACCTTA TCCGCAGTCA TAGTTCGGGC
TTAGGGGAGG TGTTTGATGA AGAAACCGTG CGGGCGGCTA TATTGTGTAG ACTTACGAGC
TTGTCGTTAG GCAAATCGGG GGTGCATATA GAGGCAATTG AACTGATGCG CGACCTATTG
AACTACCGCA TTACCCCGCT TATTTTCCAA CACGGAGGCG TGGGAGCTAG TGGCGACCTT
GTGCAGTTAG CCCATCTCGC CTTAGTGCTC ATAGGCGAAG GAGAAGTGTT CTACAAAGGC
GCGCGCAGAC CTACGGCTGA AGTATTTGCC GAAGTGGGAC TCAAACCGCT ACAAATACAC
TTACGCGAGG GTCTTTCGCT GATGAACGGC ACGTCGGTAA TGACGGGCTT GGCAGGGGTG
AATGTGTATT ACGCACAAAA GCTATTGGAT TGGACAGTGA AGTTCACAAC GGCTATCAAC
GAGCTAGTAC AGACTTATGA CGACCATTTT TCATCTGAAT TAAACAACGC CAAACAACAT
ACTGGGCAAA AAGAAATCGC CCGAATGATG CGCGACTTCT TGCACGACAG CAAGCGCACC
CGCAAACGTG CAGAACATCT TTACAAAGGG CAGCACAACG AAACTGTATT TAAAGAAAAG
GTGCAAGAAT ACTACTCCTT GCGCTGTGTG CCACAGATAC TCGGGGCTGT ATACGACACC
ATTGCGCATA CTGAGCGCAT CGTAGAAGAG GAACTGAACT CGGCTAACGA CAACCCAATA
GTAGATGTGC CTACCCAACA GGTATATCAC GGGGGTAACT TCCACGGCGA TTATATATCT
CTTGAAATGG ACAAGCTTAA ACTGGTAGTT ACCCGTATGA CAATGCTTGC TGAGCGACAG
CTCAACTACC TTTTGAACCC CAAAATCAAC GAGCTATTGC CACCATTTGT GAACGCAGGG
AAATTGGGCT TTAACTTCGG TATGCAAGGG GTACAGTTTA CCGCTACTTC TACCACTGCC
GAAAACCAAA CCCTCTCTAC CTCGATGTAT GTGCATAGTA TCCCGAACAA TAACGATAAT
CAGGATATAG TGAGTATGGG TACCAATGCG GCGACTCTTA CCCATAAAGT GATAAACAAC
GCTTTTCAGG TGCTTGCTAT TGAGGCTATC ACCATTGCGC AGGCTATCGA TATCTTGGGC
TGTTATGACG AGCTTTCGAG CACTACAAAA GAATGGTATA GGGAAATAAG AGAGATTATA
CCGTTCTTTA AGGAAGATTT GGTGTTTTAT GCTTACTTGA AGGAAGCCAC ATCGTGGTTA
AAGAAATAG
|
|---|
| Protein sequence | MKTLRTYSDF KDIVFDKKEV AISKETKALI EESYAFLKDF AENKIIYGVN TGFGPMAQYR
IEKEDQLQLQ YNLIRSHSSG LGEVFDEETV RAAILCRLTS LSLGKSGVHI EAIELMRDLL
NYRITPLIFQ HGGVGASGDL VQLAHLALVL IGEGEVFYKG ARRPTAEVFA EVGLKPLQIH
LREGLSLMNG TSVMTGLAGV NVYYAQKLLD WTVKFTTAIN ELVQTYDDHF SSELNNAKQH
TGQKEIARMM RDFLHDSKRT RKRAEHLYKG QHNETVFKEK VQEYYSLRCV PQILGAVYDT
IAHTERIVEE ELNSANDNPI VDVPTQQVYH GGNFHGDYIS LEMDKLKLVV TRMTMLAERQ
LNYLLNPKIN ELLPPFVNAG KLGFNFGMQG VQFTATSTTA ENQTLSTSMY VHSIPNNNDN
QDIVSMGTNA ATLTHKVINN AFQVLAIEAI TIAQAIDILG CYDELSSTTK EWYREIREII
PFFKEDLVFY AYLKEATSWL KK
|
|---|
| |